Locus 13725

Sequence ID dm3.chrX
Location 8,703,833 – 8,703,911
Length 78
Max. P 0.862774
window18882

overview

Window 2

Location 8,703,833 – 8,703,911
Length 78
Sequences 3
Columns 78
Reading direction forward
Mean pairwise identity 82.40
Shannon entropy 0.24933
G+C content 0.55485
Mean single sequence MFE -27.70
Consensus MFE -20.32
Energy contribution -21.43
Covariance contribution 1.11
Combinations/Pair 1.06
Mean z-score -2.11
Structure conservation index 0.73
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.96
SVM RNA-class probability 0.862774
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 8703833 78 + 22422827
AAAGGGGUUUCACCACCACCCCCUGUGUGUGUGGGUGUCUCGUCUUCUGUCUCGCUUGCACCUCUUGCAUAUUGGGUA
...((((.....)).))((((..((((((((..((((...((.....))...))))..))).....)))))..)))). ( -24.00, z-score =  -1.36, R)
>droSec1.super_34 77451 77 + 457129
AAAGGGGUUUCACCACC-CCCCGUGUGUGGGUGAGACACCCUUCUUCUGUCUCGCUUGCACCUCUUGCCAGUUGGGGA
...(((((......)))-))(((.(((..(((((((((.........)))))))))..)))).....((....)))). ( -30.80, z-score =  -1.63, R)
>droSim1.chrX 6921921 72 + 17042790
AAAGGGGUUUCACCACC-CCCCGUGUGUGGGUGAGACAACCAUCAUCUGUCUCGCUUGCACCUCUUGCUAGUU-----
...(((((......)))-))..(.(((..(((((((((.........)))))))))..))))...........----- ( -28.30, z-score =  -3.32, R)
>consensus
AAAGGGGUUUCACCACC_CCCCGUGUGUGGGUGAGACACCCAUCUUCUGUCUCGCUUGCACCUCUUGCAAGUUGGG_A
...((((...........))))..((((((((((((((.........))))))))))))))................. (-20.32 = -21.43 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:37 2011