| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,697,392 – 8,697,484 |
| Length | 92 |
| Max. P | 0.601402 |
| Location | 8,697,392 – 8,697,484 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 74.45 |
| Shannon entropy | 0.45779 |
| G+C content | 0.56201 |
| Mean single sequence MFE | -26.92 |
| Consensus MFE | -10.78 |
| Energy contribution | -10.45 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.601402 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8697392 92 + 22422827 -----GCGGG-UCUACGGCUUCCUGAACAUCCAUUUUC-CAGUCAAAUGUCGACAGCUUUUGACUUGAACCGCCCCCGGAGCUGCAGGCCCCAAGCCCA -----(.(((-(((.(((((...............(((-.(((((((.((.....)).))))))).)))(((....)))))))).)))))))....... ( -28.60, z-score = -1.61, R) >droSim1.chrX 6915197 91 + 17042790 -----GCGGG-UCUACGGCUUCCUGAACAUCCAUUUUC-CAGUCAAAUGUCGACAGCUUUUGACUUGAACCGCCCCCG-AGCUGCAGGCCCCAAGCCCA -----(.(((-(((.((((((..((......))..(((-.(((((((.((.....)).))))))).)))........)-))))).)))))))....... ( -25.80, z-score = -1.40, R) >droSec1.super_34 71077 91 + 457129 -----GCGGG-UCUACGGCUUCCUGAACAUCCAUUUUC-CAGUCAAAUGUCGACAGCUUUUGACUUGAACCGCCCCCG-AGCUGCAGGCCCCAAGCCCA -----(.(((-(((.((((((..((......))..(((-.(((((((.((.....)).))))))).)))........)-))))).)))))))....... ( -25.80, z-score = -1.40, R) >droEre2.scaffold_4690 12345478 92 - 18748788 -----GCGGG-UCUACGGCUUCCUGAACAUCCAUUUUC-CAGUCAAAUGUCGACAGCUUUUGACUUGAACCGCCCCCGGAGCUGCAGGCCCCAAUUCCC -----(.(((-(((.(((((...............(((-.(((((((.((.....)).))))))).)))(((....)))))))).)))))))....... ( -28.60, z-score = -2.16, R) >droAna3.scaffold_13047 548647 81 + 1816235 GCGGUGCGGGGCCUAUGGCUUCCUGAACAUCCAUUUUC-AAGUCAAAUGUCGACAGCUUUUGACUGAAGCCGCCCCCG--CCCA--------------- ..((.((((((....(((((((.((((........)))-)(((((((.((.....)).)))))))))))))).)))))--))).--------------- ( -33.70, z-score = -3.87, R) >dp4.chrXL_group1e 7970151 75 + 12523060 ------GAGGCCUUAUGGCUUCCUGAACAUCCAUUUCUGUGGCCAAAUGUUGACAGCCACCGACUC---CGCCUUUUGUUCCUG--------------- ------((((((....))))))..(((((......((.(((((............))))).))...---.......)))))...--------------- ( -18.99, z-score = -1.86, R) >consensus _____GCGGG_UCUACGGCUUCCUGAACAUCCAUUUUC_CAGUCAAAUGUCGACAGCUUUUGACUUGAACCGCCCCCG_AGCUGCAGGCCCCAAGCCCA .....((((.......((((....(((......)))....))))....(((((......))))).....)))).......................... (-10.78 = -10.45 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:35 2011