| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,676,108 – 8,676,163 |
| Length | 55 |
| Max. P | 0.929745 |
| Location | 8,676,108 – 8,676,163 |
|---|---|
| Length | 55 |
| Sequences | 7 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 78.61 |
| Shannon entropy | 0.39808 |
| G+C content | 0.43109 |
| Mean single sequence MFE | -12.94 |
| Consensus MFE | -10.03 |
| Energy contribution | -8.88 |
| Covariance contribution | -1.16 |
| Combinations/Pair | 1.80 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.929745 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8676108 55 - 22422827 GGGGGCUAAC-UUGAUGAGCAAACAAAAUCA------AGUCCCC---UGAUAAUGACAAUGAGAG (((((...((-(((((...........))))------)))))))---)................. ( -14.10, z-score = -2.26, R) >droSim1.chrX_random 2595203 55 - 5698898 GGGGGCUAAC-UUGAUGAGCAAACAAAAUCA------AGUCCCC---UGAUAAUGACAAUGAGAG (((((...((-(((((...........))))------)))))))---)................. ( -14.10, z-score = -2.26, R) >droSec1.super_34 50062 55 - 457129 GGGGGCUAAC-UUGAUGAGCAAACAAAAUCA------AGUCCCC---UGAUAAUGACAAUGAGAG (((((...((-(((((...........))))------)))))))---)................. ( -14.10, z-score = -2.26, R) >droYak2.chrX 9139588 58 + 21770863 GGGGGCCAACUUUGAUGAGCAAACAAAAUCA------AGUCCCC-AGUGAUAAUGACAAUGAGAG ((((((.....(((((...........))))------)))))))-.................... ( -12.40, z-score = -0.94, R) >droEre2.scaffold_4690 12325027 55 + 18748788 GGGGGCCAAC-UUGAUGAGCAAACAAAAUCA------AGUCCCC---UGAUAAUGACAAUGAGAG (((((...((-(((((...........))))------)))))))---)................. ( -14.10, z-score = -1.96, R) >droAna3.scaffold_13047 530302 53 - 1816235 GGGGAUCAAC-UUGAUGAGCAAACAAAAUCA------AGUCUCC---UGAUAAUGACAAUGGG-- .((((...((-(((((...........))))------))).)))---)...............-- ( -9.90, z-score = -0.75, R) >droMoj3.scaffold_6473 10940572 64 + 16943266 GAGGGCGUGC-UUAGUUAGUAUAUGAAUUUGUUGCAUUGUCUUUGGCUGGGCAUUAAAAUGAAAC ......((((-((((((((...(((.........))).....))))))))))))........... ( -11.90, z-score = -0.19, R) >consensus GGGGGCCAAC_UUGAUGAGCAAACAAAAUCA______AGUCCCC___UGAUAAUGACAAUGAGAG ((((((......((((...........)))).......))))))..................... (-10.03 = -8.88 + -1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:32 2011