| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,637,230 – 8,637,320 |
| Length | 90 |
| Max. P | 0.635531 |
| Location | 8,637,230 – 8,637,320 |
|---|---|
| Length | 90 |
| Sequences | 11 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 71.69 |
| Shannon entropy | 0.56309 |
| G+C content | 0.52059 |
| Mean single sequence MFE | -30.13 |
| Consensus MFE | -12.53 |
| Energy contribution | -12.31 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.635531 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8637230 90 + 22422827 -----------CAGGCCGAAAUGAGCUUUCGCCACGCCAAGGUGGCGCUGCUCAAAUAAACGAACGCCUCGUCGAAUUUGUAGCUCUAAGAGACAACGAAG--------------- -----------.....(((..(((((...((((((......))))))..)))))......(((.....))))))..(((((.((((...))).).))))).--------------- ( -25.20, z-score = -0.85, R) >droSim1.chrX_random 2580934 99 + 5698898 -----------CAGGCCGAAAUGAGCUUUCGCCACGCCAAGGUGGCGCUGCUCAAAUAAACGAACGCCUCGUCGAAUUUGUAGCUCUAAGAGACAACAACCAC--AACGAAG---- -----------..(((((...(((((...((((((......))))))..)))))......))...)))((((.(...((((.((((...))).).))))...)--.))))..---- ( -26.80, z-score = -1.45, R) >droYak2.chrX 9102629 101 - 21770863 -----------CAGCCCGAAAUGAGCUUUUGCCACGCCAAGGUGGCGCUGCUCAAAUAAACGAACGCCUCGUCGAAUUUGUGGCUCAGAGAGACAACGACCACAAAUCGAAG---- -----------..........(((((...((((((......))))))..)))))......(((.....)))((((.(((((((.((...........)))))))))))))..---- ( -29.90, z-score = -1.75, R) >droEre2.scaffold_4690 12286692 99 - 18748788 -----------CAGGCCGAAAUGAGCUUUUGCCACGCCAAGGUGGCGCUGCUCAAAUAAACGAACGCCUCGUCGAAUUUGUGGCUCGGAGAGACAAGAGCCAC--AUCGAAG---- -----------.((((((...(((((...((((((......))))))..)))))......))...))))..((((...((((((((..........)))))))--)))))..---- ( -36.40, z-score = -2.54, R) >droAna3.scaffold_13047 494155 103 + 1816235 -----------CAGCCCGAAAUGAGCUUUUGCCACGCCAAGGUGGCGCUGCUCAAAUAAACGAACGCCUCGUUGAAUUUGUAGCUCGCAGAGACAACAAAAACACGGACAGCAA-- -----------..(((((...(((((...((((((......))))))..)))))................((((..(((((.....)))))..)))).......)))...))..-- ( -29.20, z-score = -1.22, R) >dp4.chrXL_group1e 7909603 79 + 12523060 ----------CCAGCCUGAAAUGAGCUUUUGCCACGCAAAGGUGGCGCUGCUCAAAUAAACGAACGCCUCGUUGAUUUUGUAGCACAGG--------------------------- ----------....((((............(((((......)))))(((((..((((.(((((.....))))).)))).))))).))))--------------------------- ( -26.10, z-score = -2.06, R) >droPer1.super_13 1636023 105 - 2293547 ----------CCAGCC-GAAAUGAGCUUUUGCCACGCAAAGGUGGCGCUGCUCAAAUAAACGAACGCCUCGUUGAUUUUGUAGCAGAGGCAGAGUGGUGCCCAGAAGGGCGUGGGG ----------((((((-(...(((((...((((((......))))))..)))))...........(((((((((......)))).)))))....))))((((....)))).))).. ( -41.50, z-score = -2.12, R) >droWil1.scaffold_181150 3746254 100 - 4952429 GUUCAACACAGUCCUCUAAAAUGAGCUUUUGCCACGCCAAGGUGCCGUUGCUCAAAUAAACGAACGCCUCGUUGAAUUUGCAGUAGAACAGGCAAAGGAG---------------- .............(((......)))((((((((.(((....)))...((((((((((.(((((.....)))))..))))).)))))....))))))))..---------------- ( -26.40, z-score = -1.24, R) >droVir3.scaffold_12726 2450472 94 + 2840439 --------AGGCGGCCUCAAAUGAGCUUUUGCCACGCAAAGGUGCCGUUGCUCAAAUAAACGAACGCCUCGUUGAAUUUGCAGCAGACAAGGGAGAGCUACA-------------- --------..(..(((((......((((((((...)))))))).((.((((((((((.(((((.....)))))..))))).)))))....))))).))..).-------------- ( -30.20, z-score = -1.06, R) >droMoj3.scaffold_6473 10890700 92 - 16943266 ----------GCGCCCCCAAAUGAGCUUUUGCCACGCAAAGGUGCCGUUGCUCAAAUAAACGAACGCCCCGUUGAAUUUGCAGCCGAAAAGGGGCGUCGCGA-------------- ----------(((((((..((((.((((((((...))))))))..))))((((((((.((((.......))))..))))).)))......))))))).....-------------- ( -32.30, z-score = -1.50, R) >droGri2.scaffold_14853 8601254 92 + 10151454 ----------GCGCUCUCAAAUGAGCUUUUGCCACGCAAAGGUGCCGUUGUUCAAAUAAACGAACGCCUCGUUGAAUUGGAAGCAGAGUGGGGAGAGCUAGA-------------- ----------..((((((.((((.((((((((...))))))))..)))).(((((...(((((.....)))))...)))))...........))))))....-------------- ( -27.40, z-score = -0.49, R) >consensus ___________CAGCCCGAAAUGAGCUUUUGCCACGCCAAGGUGGCGCUGCUCAAAUAAACGAACGCCUCGUUGAAUUUGUAGCACAGAGAGACAAGAACCA______________ .....................(((((....((..(((....)))..)).))))).....((((.....))))............................................ (-12.53 = -12.31 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:27 2011