| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,633,560 – 8,633,613 |
| Length | 53 |
| Max. P | 0.990476 |
| Location | 8,633,560 – 8,633,613 |
|---|---|
| Length | 53 |
| Sequences | 8 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 68.01 |
| Shannon entropy | 0.62043 |
| G+C content | 0.44378 |
| Mean single sequence MFE | -11.52 |
| Consensus MFE | -6.76 |
| Energy contribution | -7.10 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.42 |
| SVM RNA-class probability | 0.990476 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8633560 53 - 22422827 GAAACACAAUUACCUGUCGCC-GGCGGGUGAUAUAUACACACUUGCACACAUUA-------- ........(((((((((....-.)))))))))......................-------- ( -11.50, z-score = -1.74, R) >dp4.chrXL_group1e 7904752 50 - 12523060 ----CACAAUUACCUGUCGCUAUCGGGGUGAAAAAUACACACCCACACACAUGA-------- ----....................((((((.......))).)))..........-------- ( -7.60, z-score = -0.19, R) >droAna3.scaffold_13047 490619 61 - 1816235 GAAACACAAUUACCUGUCGCU-GGCGGGUGAUAUACACACACACACCCGCCCAGGUACACUG ..........((((((.....-((((((((.............))))))))))))))..... ( -21.52, z-score = -3.82, R) >droEre2.scaffold_4690 12283211 53 + 18748788 GAAACACAAUUACCUGUCGCC-GGCGGGUGAUAUAUACACACUUGGCCACAUUA-------- ........(((((((((....-.)))))))))......................-------- ( -11.50, z-score = -1.01, R) >droYak2.chrX 9098880 55 + 21770863 GAAACACAAUUACCUGUCGCC-GCCGGGUGAUAUAUACACACUGGCACACACAUUA------ .....................-((((((((.......))).)))))..........------ ( -11.20, z-score = -1.29, R) >droSec1.super_34 11089 53 - 457129 GAAACACAAUUACCUGUCGCC-GGCAGGUGAUAUAUACACACUUGCACACAUUA-------- ........(((((((((....-.)))))))))......................-------- ( -12.20, z-score = -2.56, R) >droMoj3.scaffold_6473 10885313 51 + 16943266 GCAACACAAUUACACAACACU-UAAAGGUGGUAUAUAGAGAGAUGUGCGAAU---------- .................((((-....))))((((((......))))))....---------- ( -7.10, z-score = -1.08, R) >droWil1.scaffold_181150 3741546 55 + 4952429 GAAACUGAAUUACCUGUCGCU-UGUGGGUGAUAAAUGUAUAUACAUCUACAUACAU------ ..................(..-(((((((((((......))).))))))))..)..------ ( -9.50, z-score = -0.91, R) >consensus GAAACACAAUUACCUGUCGCC_GGCGGGUGAUAUAUACACACUUGCACACAUAA________ ........((((((((........)))))))).............................. ( -6.76 = -7.10 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:26 2011