| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,624,132 – 8,624,207 |
| Length | 75 |
| Max. P | 0.629676 |
| Location | 8,624,132 – 8,624,207 |
|---|---|
| Length | 75 |
| Sequences | 3 |
| Columns | 75 |
| Reading direction | reverse |
| Mean pairwise identity | 86.16 |
| Shannon entropy | 0.19255 |
| G+C content | 0.67744 |
| Mean single sequence MFE | -29.60 |
| Consensus MFE | -25.15 |
| Energy contribution | -25.27 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.629676 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8624132 75 - 22422827 UGGGACAUUGCGGGCGUUUGCUGUCCGGGAGAGGGGGCGUGGCAUUUGGGGAACGCAGCCACAUAGCCGCAGACA .......((((((.(....(((.(((....).)).)))(((((...(((....).)))))))...)))))))... ( -25.20, z-score = -0.17, R) >droSec1.super_35 466070 74 - 471130 UGGGACACUGCGGGCGGCUGCUGUCCGGGAG-GGGGGCGUGGCAUUUGGGGAACGCAGCCACAUAGCCGCAGACA .............(((((((((.(((....)-)).)))(((((...(((....).)))))))..))))))..... ( -31.80, z-score = -1.58, R) >droEre2.scaffold_4690 12273917 64 + 18748788 ----------UGGGCGGCUGCUGUCCGGGAG-GGGGGCGUGGCAUCUGGGGAACGCAGCCACAUAGCCGCAGACA ----------...(((((((((.(((....)-)).)))(((((...(((....).)))))))..))))))..... ( -31.80, z-score = -2.55, R) >consensus UGGGACA_UGCGGGCGGCUGCUGUCCGGGAG_GGGGGCGUGGCAUUUGGGGAACGCAGCCACAUAGCCGCAGACA .............(((((((((.(((....).)).)))(((((...(((....).)))))))..))))))..... (-25.15 = -25.27 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:26 2011