| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,599,515 – 8,599,614 |
| Length | 99 |
| Max. P | 0.702535 |
| Location | 8,599,515 – 8,599,614 |
|---|---|
| Length | 99 |
| Sequences | 9 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 76.11 |
| Shannon entropy | 0.50340 |
| G+C content | 0.35096 |
| Mean single sequence MFE | -24.37 |
| Consensus MFE | -10.28 |
| Energy contribution | -9.66 |
| Covariance contribution | -0.63 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.702535 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8599515 99 + 22422827 UUUUUUUGUUCUGAUUGAAUUGAAAACAUUUUAUGCAUUUGAUUUAAUCAAAAGAAAAAUAGAAUGCAGU---CAGGUUCACCAGGGCCGUCAGAGGGGAAA-- ..(((((.(((((((.....(((...((((((((.(.((((((...)))))).)....))))))))...)---))(((((....)))))))))))).)))))-- ( -25.70, z-score = -2.44, R) >droSim1.chrX 6849023 99 + 17042790 UUGUUUUUUUCUGAUUGAAUUGAAAACAUUUUAUGCAUUUGAUUUAAUCAAAAGAAAAAUAGAAUGCAGU---CAGGUUCACCAGGGCCGACAGAGGGGAAA-- ...((((((((((.......(((...((((((((.(.((((((...)))))).)....))))))))...)---))(((((....)))))..)))))))))).-- ( -24.10, z-score = -2.08, R) >droSec1.super_35 440952 99 + 471130 UUGUUUUUUUCUGAUUGAAUUGAAAACAUUUUAUGCAUUUGAUUUAAUCAAAAGAAAAAUAGAAUGCAGU---CAGGUUCACCAGGGCCGACAGAGGGGAAA-- ...((((((((((.......(((...((((((((.(.((((((...)))))).)....))))))))...)---))(((((....)))))..)))))))))).-- ( -24.10, z-score = -2.08, R) >droYak2.chrX 9057392 96 - 21770863 ---UUUUUUUCUGAUUGAAUUGAAAACAUUUUAUGCAUUUGAUUUAAUCAAAAGAAAAAUAGAAUGCAGU---CAGGUUCACCAGGGCCGUCAGAGGGAAAA-- ---((((((((((((.....(((...((((((((.(.((((((...)))))).)....))))))))...)---))(((((....))))))))))))))))).-- ( -26.40, z-score = -3.26, R) >droEre2.scaffold_4690 12231407 97 - 18748788 --UUUUUUUUCUGAUUGAAUUGAAAACAUUUUAUGCAUUUGAUUUAAUCAAAAGAAAAAUAGAAUGCAGU---CAGGUUCCCCAGGGCCGUCAGAGGGGAAA-- --.((((((((((((.....(((...((((((((.(.((((((...)))))).)....))))))))...)---))(((((....))))))))))))))))).-- ( -25.70, z-score = -2.18, R) >droAna3.scaffold_13047 1369523 104 - 1816235 UGUUUUUGCCAGGAUUGAAUUGAAAACAUUUUAUGCAUUUGAUUUAAUCAAAAGAAAAAGAGAAUGCAGUGCAUGGUCUCAGUGGUGCGGACCGGCCGGAGGAG (.(((..(((..((((((((..((..(((...)))..))..))))))))..........((((((((...))))..))))...(((....))))))..))).). ( -23.50, z-score = -0.14, R) >dp4.chrXL_group1e 7839059 97 + 12523060 GACUUGUAUUCUGAUUGAAUUGAAAACAUUUUAUGCAUUUGAUUUAAUCAAAAGAAAAACAGAAUGUGAAGGCCCGCUGCAGCAGUAGAAGCAGGCA------- ...(..((((((((((((((..((..(((...)))..))..))))))))....(.....)))))))..)..(((.(((...........))).))).------- ( -21.30, z-score = -0.96, R) >droPer1.super_13 1579346 97 - 2293547 GACUUGUAUUCUGAUUGAAUUGAAAACAUUUUAUGCAUUUGAUUUAAUCAAAAGAAAAACAGAAUGCGAAGGCCCGCUGCAGCAGUAGAAGCAGGCG------- ...(((((((((((((((((..((..(((...)))..))..))))))))....(.....))))))))))..(((.(((...........))).))).------- ( -24.00, z-score = -1.89, R) >droVir3.scaffold_12970 6586030 103 - 11907090 GUACGUGCUUCUGAUUGAAUUGAAAACAUUUUAUGCAUUUGAUUUUAUCAAAAGAGAAAUUGAAUGCGAAUGCGAAUGCGAAUGCAGGCAAUGUACAAAGACA- (((((((((((....((((.((....)).)))).(((((..(((((.((....)))))))..)))))))).))(..(((....)))..).)))))).......- ( -24.50, z-score = -1.52, R) >consensus UUUUUUUUUUCUGAUUGAAUUGAAAACAUUUUAUGCAUUUGAUUUAAUCAAAAGAAAAAUAGAAUGCAGU___CAGGUUCACCAGGGCCGACAGAGGGGAAA__ ...........(((((((((..((..(((...)))..))..))))))))).........................((....))..................... (-10.28 = -9.66 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:22 2011