| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,578,790 – 8,578,842 |
| Length | 52 |
| Max. P | 0.751105 |
| Location | 8,578,790 – 8,578,842 |
|---|---|
| Length | 52 |
| Sequences | 6 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 66.17 |
| Shannon entropy | 0.54078 |
| G+C content | 0.48284 |
| Mean single sequence MFE | -13.93 |
| Consensus MFE | -7.62 |
| Energy contribution | -8.57 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.751105 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8578790 52 + 22422827 AGGUGCUCUCAUG--UGUCACACAGAAAAGCCAGUGCGAACUGGAAAGAGCAAG---------------- ...((((((..((--((...))))......(((((....)))))..))))))..---------------- ( -16.00, z-score = -1.77, R) >droEre2.scaffold_4690 12213133 52 - 18748788 AGGUGCUCUUAUA--CGCCAGACAGCAAGGCCAGUGAAAACUGGAUAGGGCAAG---------------- .((((........--)))).....((....(((((....))))).....))...---------------- ( -16.20, z-score = -1.81, R) >droYak2.chrX 9038006 54 - 21770863 AGGUGCUCUCAUAUGCGCCAGGCAGAAAGGCCAGUGGGAACUGGAAAGAGCAAG---------------- .(((((........)))))..((.......(((((....))))).....))...---------------- ( -16.90, z-score = -1.10, R) >droSec1.super_35 425329 52 + 471130 AGGUGUUCUCAUG--UGUCGCACAGAAAGGCCAGUGAGAACUGGAAAGAGCAAG---------------- ...((((((..((--((...))))......(((((....)))))..))))))..---------------- ( -13.60, z-score = -1.13, R) >droSim1.chrU 11338058 52 + 15797150 AGGUGCUCUCAUG--UGUCGCACAGAAAGGCCAGUGAGAACUGGAAAGAGCAAG---------------- ...((((((..((--((...))))......(((((....)))))..))))))..---------------- ( -16.00, z-score = -1.57, R) >droVir3.scaffold_12970 11475304 66 + 11907090 --GUUUAUUCACAUUCGUAAAACAAAAGGGC--GUAAGAAUAAAUUUUAGCAACAACUUGAGACAGUAAA --((((((((.....(((....(....).))--)...))))))))......................... ( -4.90, z-score = 0.60, R) >consensus AGGUGCUCUCAUA__CGUCACACAGAAAGGCCAGUGAGAACUGGAAAGAGCAAG________________ ...((((((.......(.....).......(((((....)))))..)))))).................. ( -7.62 = -8.57 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:21 2011