| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,569,698 – 8,569,800 |
| Length | 102 |
| Max. P | 0.500000 |
| Location | 8,569,698 – 8,569,800 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 75.49 |
| Shannon entropy | 0.46235 |
| G+C content | 0.40205 |
| Mean single sequence MFE | -23.00 |
| Consensus MFE | -11.93 |
| Energy contribution | -12.21 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 8569698 102 + 22422827 UCCUUCCUGUUCUUAGUGAAUUAAUCCCCGAAAUUGCUUAAAACCUUUUGUA-AGCUAAUA---AGCAAAUUUGCAGC-AUACAUUCGGGGGCCACUUUGGAUUCCC- ........((((..((((......((((((((...(((((..........))-))).....---.(((....)))...-.....)))))))).))))..))))....- ( -22.60, z-score = -1.10, R) >droSim1.chrX 6817169 103 + 17042790 UCCUUCCUGUUCCUAGUGAAUUAAUCCCCGAAAUUGCUUAAAAACUUUUGUAUAGCUAAUA---AGCAAAUUUGCAGC-AUACAUUCGGGGGCCACUUUGGAUUCCC- ..........(((.((((......((((((((..((((((((.((....))...(((....---)))...)))).)))-)....)))))))).))))..))).....- ( -23.70, z-score = -1.53, R) >droSec1.super_35 416373 103 + 471130 UCCUUCCUGUUCCUAGUGAAUUAAUCCCCGAAACUGCUUAAAAACUUUUGUGUAGCUAAUA---AGUAAAUUUGCAGC-AUACAUUCGGGGGCCACUUUGGAUUCCC- ..........(((.((((......((((((((..((((((((....(((((.......)))---))....)))).)))-)....)))))))).))))..))).....- ( -22.00, z-score = -0.89, R) >droYak2.chrX 9028971 103 - 21770863 UCCUUCCUGUUCUUAGUGAAUUAAUCCCCGAAAUUGCUUAAAAACUUUUGUA-AGCUAAUA---AGCAAAUUUGCUGC-AUACAUUCGGGGGCCACACUGGAAAACCC .........((((.((((......((((((((...(((((.((....)).))-))).....---((((....))))..-.....))))))))...))))))))..... ( -23.60, z-score = -1.76, R) >droEre2.scaffold_4690 12204155 102 - 18748788 UCCUUCCUGUUCUUAGUGAAUUAAUCCCCGAAAUUGCUUAAAAACUUUUGUA-AGCUAAUA---AGCAAAUUUGCUGC-AUACACUCGGGGGCCACUAUGGAAUCCC- ........((((((((((......(((((((....(((((.((....)).))-))).....---((((....))))..-......))))))).))))).)))))...- ( -23.30, z-score = -1.69, R) >droAna3.scaffold_12916 8770384 89 - 16180835 ------UCGUUCUUGCAGCG-----CCUCGAAGGUGAAAGAAAUCUAGCGCGGCGCUAAAAGAAAACAAAAUGGUUUUUGAAAAGUUGAGGGAAAUAUUU-------- ------((.(((..((((((-----((.((.((((.......))))..)).))))))....((((((......)))))).....)).))).)).......-------- ( -22.80, z-score = -1.24, R) >consensus UCCUUCCUGUUCUUAGUGAAUUAAUCCCCGAAAUUGCUUAAAAACUUUUGUA_AGCUAAUA___AGCAAAUUUGCAGC_AUACAUUCGGGGGCCACUUUGGAUUCCC_ ....(((.((((.....))))....(((((((...(((...............))).........((......)).........)))))))........)))...... (-11.93 = -12.21 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:20 2011