| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,560,791 – 8,560,853 |
| Length | 62 |
| Max. P | 0.834236 |
| Location | 8,560,791 – 8,560,853 |
|---|---|
| Length | 62 |
| Sequences | 6 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 68.37 |
| Shannon entropy | 0.54522 |
| G+C content | 0.40788 |
| Mean single sequence MFE | -16.53 |
| Consensus MFE | -5.34 |
| Energy contribution | -6.78 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.834236 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8560791 62 + 22422827 -GAAAUCG----AUACCAAAAUGUGAAGUGUGCUGCUCACUUCAAGGUGUUGAAUUGUUGUGAUAGG-------- -....(((----(((((......(((((((.......))))))).))))))))..............-------- ( -16.70, z-score = -2.66, R) >droEre2.scaffold_4690 12195276 66 - 18748788 -GAAAUCG----AUACCUAAAUGUGGAGUGUG---CUCACUUCAAGGUGUUGAAU-GUUGUGCUGGACAAUCCAG -....(((----((((((.....(((((((..---..))))))))))))))))..-......((((.....)))) ( -22.10, z-score = -3.44, R) >droYak2.chrX 9019437 65 - 21770863 -GAAAUCGAUACCCACAUAAGUGUGGAGUGUGU-GCUCACUUCAAGGUGUUGAAUAGUUAAACCAGC-------- -....(((((((((((....)))(((((((...-...))))))).))))))))..............-------- ( -19.00, z-score = -2.73, R) >droSec1.super_35 407286 63 + 471130 -GAAAUCGUGAAAUACCUAGAUGUGAAGUGUG---CUCACUUCAAGGUGUUGAAUUGUUGUGAUAGG-------- -...((((..((((((((.....(((((((..---..))))))))))))))......)..))))...-------- ( -16.10, z-score = -2.68, R) >droSim1.chrX 6808204 60 + 17042790 GAAAAUCG----AUACCUAAAUGCGAAGUGUG---CUCACUUCAAGGUGUUGAAUUGUUGUGAUAGG-------- .....(((----((((((......((((((..---..)))))).)))))))))..............-------- ( -15.90, z-score = -2.76, R) >anoGam1.chr3L 22212729 61 - 41284009 --AUACUA----GUAACAAAAGGCCUUUUAUACUGCCCAUUUUACGGUAUUGAAUUGUUGCGAUGCG-------- --......----(((((((......(((.((((((.........)))))).))))))))))......-------- ( -9.40, z-score = -0.06, R) >consensus _GAAAUCG____AUACCUAAAUGUGAAGUGUG___CUCACUUCAAGGUGUUGAAUUGUUGUGAUAGG________ ............((((((.....(((((((.......)))))))))))))......................... ( -5.34 = -6.78 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:15 2011