| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,558,411 – 8,558,476 |
| Length | 65 |
| Max. P | 0.957440 |
| Location | 8,558,411 – 8,558,476 |
|---|---|
| Length | 65 |
| Sequences | 8 |
| Columns | 68 |
| Reading direction | reverse |
| Mean pairwise identity | 66.54 |
| Shannon entropy | 0.64200 |
| G+C content | 0.44351 |
| Mean single sequence MFE | -15.55 |
| Consensus MFE | -7.32 |
| Energy contribution | -7.34 |
| Covariance contribution | 0.02 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.64 |
| SVM RNA-class probability | 0.957440 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8558411 65 - 22422827 ACUUUUCUCCCAGUG--CAAUUGUGUAG-GCAGCCGAAAUCGAAAUUUGGUUCGGCUGUCUUCAAUCU ...............--..((((...((-(((((((((.((((...))))))))))))))).)))).. ( -20.30, z-score = -3.29, R) >droSim1.chrX_random 2569159 65 - 5698898 AGUUUUCUCCCAGUG--CAAUUGUGUAG-GCAGCCGAAAUCGAAAUUUGGUUCGGCUGUCUUCAAUCU ...............--..((((...((-(((((((((.((((...))))))))))))))).)))).. ( -20.30, z-score = -3.30, R) >droSec1.super_35 405700 65 - 471130 AGUUUUCUCCCAGUG--CAAUUGUGUAG-GCAGCCGAAAUCGAAAUUUGGUUCGGCUGUCUUCAAUCU ...............--..((((...((-(((((((((.((((...))))))))))))))).)))).. ( -20.30, z-score = -3.30, R) >droYak2.chrX 9017762 65 + 21770863 AUUUUUCUCGCAGUG--CACCUGUGUAG-GCAGCCGAAUUCGAAAUUUGGUUCGGCUGUCUUCAAUCU ........(((((..--...))))).((-(((((((((((........)))))))))))))....... ( -23.00, z-score = -3.86, R) >droEre2.scaffold_4690 12193275 65 + 18748788 AGUUUUCUGCCAGUG--CACUUGUGUAG-GCAGCCAAAAUAGAAAUUUGGUUCGGCUGUCUUCAAUCU .......(((....)--))....((.((-((((((.((..(....)....)).)))))))).)).... ( -14.00, z-score = -0.23, R) >droAna3.scaffold_13248 794309 66 + 4840945 UAUUUUCUUGCAGUGCCCCCCUAAGUAG-GCAGCUAGCAAC-AAAUUUGGUUCGGCUGUCUUCAAUCU ........................(.((-(((((((((...-.......))).)))))))).)..... ( -11.80, z-score = 0.55, R) >dp4.chrXL_group1e 7796891 51 - 12523060 ------------AU---CUUUCGCUCAGUGUAGUGGGAAAACAAAUUUUGUUUCGAAGACAGGCAG-- ------------..---.(..((((......))))..)........((((((.....))))))...-- ( -6.40, z-score = 0.86, R) >droPer1.super_13 1536975 51 + 2293547 ------------AU---CUUUCGCUCAGUGUAGCGGGAAAACAAAUUUGGUUUCGAAGACAGGCAG-- ------------..---.....(((...(((..((..(...((....)).)..))...))))))..-- ( -8.30, z-score = 0.21, R) >consensus AGUUUUCUCCCAGUG__CAAUUGUGUAG_GCAGCCGAAAUCGAAAUUUGGUUCGGCUGUCUUCAAUCU .............................(((((((((............)))))))))......... ( -7.32 = -7.34 + 0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:14 2011