| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,550,187 – 8,550,249 |
| Length | 62 |
| Max. P | 0.573651 |
| Location | 8,550,187 – 8,550,249 |
|---|---|
| Length | 62 |
| Sequences | 5 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 93.75 |
| Shannon entropy | 0.10881 |
| G+C content | 0.46032 |
| Mean single sequence MFE | -18.56 |
| Consensus MFE | -14.40 |
| Energy contribution | -15.40 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.573651 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8550187 62 + 22422827 AAUCGAAGCGGACUUGAAGUCGCUUUAACCACGCUUCGACUUUUCAGUUCGACUUUGAGUUC ..((((((((((((.(((((((..............)))))))..)))))).)))))).... ( -19.54, z-score = -2.44, R) >droAna3.scaffold_13248 782398 60 - 4840945 AACCGAACCGGACUGGAAGUCGUUUUAACCACGCUUCGAGUUUUGAGUUCGACUUUGAGU-- ...(((((((((((.((((.(((.......))))))).)).)))).))))).........-- ( -17.30, z-score = -1.34, R) >droSec1.super_35 397694 60 + 471130 AAUCGAAGCGGACUUGAAGUCGCUUUAACCACGCUUCGACUUUUGAGUUCGACUUUGAGU-- ..((((((((((((..((((((..............)))).))..)))))).))))))..-- ( -20.54, z-score = -2.81, R) >droYak2.chrX 9010058 60 - 21770863 AACCGAAGCGGUCUUGAAGUCGCUUUAACCACGCUUCGACUUUUGAGUUCGACUUUGAGU-- ...(((((((...((((((...))))))...)))))))((((..(((.....))).))))-- ( -16.40, z-score = -1.11, R) >droEre2.scaffold_4690 12185542 60 - 18748788 AACCGAAGCGGACUUGAAGUCGCUUUAACCACGCUUCGACUUUUGAGUUCGACUUUGAGU-- .(((((((((((((..((((((..............)))).))..)))))).))))).))-- ( -19.04, z-score = -2.43, R) >consensus AACCGAAGCGGACUUGAAGUCGCUUUAACCACGCUUCGACUUUUGAGUUCGACUUUGAGU__ ...(((((((((((((((((((..............)))).)))))))))).)))))..... (-14.40 = -15.40 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:12 2011