| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,543,939 – 8,544,033 |
| Length | 94 |
| Max. P | 0.588979 |
| Location | 8,543,939 – 8,544,033 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 91.59 |
| Shannon entropy | 0.14491 |
| G+C content | 0.40273 |
| Mean single sequence MFE | -25.39 |
| Consensus MFE | -20.22 |
| Energy contribution | -20.70 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.588979 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8543939 94 - 22422827 AAUCUGUAGACCUAAGUAGUUUUUGGGGGAGCGGGAAUCUAUCUUAGGGAUUACUCUUAUCAACUUGUUUAUUUAGCAGAGAUAUUAGGUCACA .....((.(((((((((((((((((((..((.......))..))))))))))))...((((...(((((.....))))).))))))))))))). ( -23.10, z-score = -1.12, R) >droEre2.scaffold_4690 12179135 92 + 18748788 AAUCGGUAGACCUAAGUAGUUGUUGGGG--GCGGGAAUGUAUCUUAGGGAUUACUCUUAUCAACUUGUUUAUUCAGCAGAGAUCUUAGGUCAAA ........((((((((...((((((((.--(((((..((......((((....))))...)).)))))...))))))))....))))))))... ( -24.90, z-score = -1.79, R) >droYak2.chrX 9003406 92 + 21770863 AAUCGGUAGACCUAAGUAGUUCUUGGGG--GCGGGAAUGUAUCUCAGGGAUUACGCUUAUCGACUUGUUUACUCAGCAGAGAUCGUAGGUCAGA ........((((((.(((((((((((((--(((....))).)))))))))))))......(((((((((.....)))).)).)))))))))... ( -27.90, z-score = -1.63, R) >droSec1.super_35 391427 92 - 471130 AAUCUGUAGACCUAAGUAGUUUUUGGGG--GCGGGAAUCUAUCUUAGGGAUUACUCUUAUCAACUUGUUUAUUUAGCAGAGAUAUUAGGUCACA .....((.((((((((((((((((((((--..((....)).)))))))))))))...((((...(((((.....))))).))))))))))))). ( -23.60, z-score = -1.68, R) >droSim1.chrX 6798238 92 - 17042790 AAUCUGUAGACCUAAGUAGUUUCUGGGG--GCGGGAAUCUAUCUCAGGGAUUACGCUUAUCAACUUCUUUAUUUAGCAGAGAUAUUAGGUCACA .....((.((((((((((((..((((((--..((....)).))))))..)))))(((.................))).......))))))))). ( -27.43, z-score = -2.82, R) >consensus AAUCUGUAGACCUAAGUAGUUUUUGGGG__GCGGGAAUCUAUCUUAGGGAUUACUCUUAUCAACUUGUUUAUUUAGCAGAGAUAUUAGGUCACA ........((((((((((((((((((((.............)))))))))))))...((((...(((((.....))))).)))))))))))... (-20.22 = -20.70 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:11 2011