| Sequence ID | dm3.chr2L |
|---|---|
| Location | 918,354 – 918,414 |
| Length | 60 |
| Max. P | 0.871663 |
| Location | 918,354 – 918,414 |
|---|---|
| Length | 60 |
| Sequences | 4 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 96.39 |
| Shannon entropy | 0.05723 |
| G+C content | 0.47917 |
| Mean single sequence MFE | -17.25 |
| Consensus MFE | -16.98 |
| Energy contribution | -16.80 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.871663 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 918354 60 - 23011544 CACAGCACUCUAUAUUGUCAGCGGGCAACAUCUUGUUGUUGUUUUUUGGUGCUGGAACCG ..((((((.(......).(((..(((((((......)))))))..)))))))))...... ( -17.00, z-score = -1.75, R) >droSim1.chr2L 907583 60 - 22036055 CACAGCACUCUAUGUUGUCAGCGGGCAACAUCUUGUUGUUGUUUUUUGGUGCUGGAACCG .(((((((...((((((((....))))))))...).)))))).....(((......))). ( -17.20, z-score = -1.26, R) >droSec1.super_14 889845 60 - 2068291 CACGGCACUCCAUGUUGUCAGCGGGCAACAUCUUGUUGUUGUUUUUUGGUGCUGGAACCG ..(((...((((.(.(..(((..(((((((......)))))))..)))..)))))).))) ( -17.80, z-score = -1.01, R) >droYak2.chr2L 905512 60 - 22324452 CACAGCACUCUAUAUUGUCAGCGGGCAACAUCUUGUUGUUGUUUUUUGGUGCUGGAACUG ..((((((.(......).(((..(((((((......)))))))..)))))))))...... ( -17.00, z-score = -1.82, R) >consensus CACAGCACUCUAUAUUGUCAGCGGGCAACAUCUUGUUGUUGUUUUUUGGUGCUGGAACCG ..(((((((.........(((((((......))))))).........)))))))...... (-16.98 = -16.80 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:21 2011