| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,486,177 – 8,486,290 |
| Length | 113 |
| Max. P | 0.813806 |
| Location | 8,486,177 – 8,486,290 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 80.71 |
| Shannon entropy | 0.37134 |
| G+C content | 0.51634 |
| Mean single sequence MFE | -29.43 |
| Consensus MFE | -21.82 |
| Energy contribution | -23.22 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.813806 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8486177 113 + 22422827 UAGUUCGCCAAGCAGCGCAUACAGGCGAUUGGCACAUUCCGCCAGUCACACCGAGCCGCGCACACGGCUGGCAGGCCAGUUAAAUGAACAUUAUUCCUUACUUUUCUGUCCAC ..(((((.......((((.....((.(((((((.......)))))))...)).....))))....((((((....))))))...)))))........................ ( -31.40, z-score = -1.13, R) >dp4.chrXL_group1e 7722438 103 + 12523060 UAUCUCAACAGGGUGCACACAAUGGCAACU------CUGGGCCAGUAACAGCAGGCAACACACACA-CACACAGUUUGAC--AGUUAACAUCAUUCUUUAUUUUAUUUUUUG- ....((((((((((((........)).)))------))).(((.((....)).)))..........-........)))).--..............................- ( -15.10, z-score = -0.17, R) >droSim1.chrX_random 2552448 113 + 5698898 UAGUUCGCCAAGCAGCGCAUACAGGCGAUUGGCACAUUCCGCCAGUCACACCGAGCCGCGUACACGGCUGGCAGGCCAGUUAAACGAACAUUAUUCCUUACUUUUCUGUCCAC ..(((((....((.((((......))(((((((.......))))))).......)).))......((((((....))))))...)))))........................ ( -31.70, z-score = -1.47, R) >droSec1.super_35 335982 113 + 471130 UAGUUCGCCAAGCAGCGCAUACAGGCGAUUGGCACAUUCCGCCAGUCACACCGAGCCGCGUACACGGCUGGCAGGCCAGUUAAACGAACAUUAUUCCUUACUUUUCUGUCCAC ..(((((....((.((((......))(((((((.......))))))).......)).))......((((((....))))))...)))))........................ ( -31.70, z-score = -1.47, R) >droYak2.chrX 8945027 113 - 21770863 UAGUUCGACCAGUAGCGCAUACAGGCGAUUGGCACAUUUCGCCAGUCACACCGAGCCGCGCACACGGCUGGCAGGCCAGUUAAACGAACAUUAUUCCUUACUUUUCUGCCCAC ..(((((....((.((((.....((.(((((((.......)))))))...)).....))))))..((((((....))))))...)))))........................ ( -34.20, z-score = -2.46, R) >droEre2.scaffold_4690 12123665 113 - 18748788 UAGUUCGCCAAGUAGCGCACACAAGCGAUUGGCACAUUUCGCCAGUCACACUGAGCCGCGCACACGGCUGGCAGGCCAGUUAAACGAACAUUAUUCCUUACUUUUCUGCCCAC ..((.(((......))).))....(.(((((((.......))))))).)....(((((......)))))((((((..(((.....(((.....)))...)))..))))))... ( -32.50, z-score = -1.86, R) >consensus UAGUUCGCCAAGCAGCGCAUACAGGCGAUUGGCACAUUCCGCCAGUCACACCGAGCCGCGCACACGGCUGGCAGGCCAGUUAAACGAACAUUAUUCCUUACUUUUCUGUCCAC ..(((((.......((((.....((.(((((((.......)))))))...)).....))))....((((((....))))))...)))))........................ (-21.82 = -23.22 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:10 2011