Locus 13698

Sequence ID dm3.chrX
Location 8,484,977 – 8,485,093
Length 116
Max. P 0.916012
window18847 window18848

overview

Window 7

Location 8,484,977 – 8,485,093
Length 116
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 90.69
Shannon entropy 0.16574
G+C content 0.34828
Mean single sequence MFE -20.78
Consensus MFE -17.50
Energy contribution -17.66
Covariance contribution 0.16
Combinations/Pair 1.12
Mean z-score -2.14
Structure conservation index 0.84
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.25
SVM RNA-class probability 0.916012
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 8484977 116 + 22422827
UUUAGACACUUUCAAACCGCCAAGGUAUUCAUCUCACCUUGGAAUUACCUAAUCUAUUUUUGCGGUCAAACUAGUGACAAAUCUCUAUAACUAAUUUACAGAGAUCAUCUCCUUUU
......((((.....(((((((((((.........))))))((((..........))))..)))))......))))....((((((.(((.....))).))))))........... ( -20.50, z-score =  -2.45, R)
>droEre2.scaffold_4690 12122459 116 - 18748788
UUUUGACAAUUUUAAAACUCCAAGGUUUUCAGCUCACCUUGGAAUUACCUAAUCUAUUGUUGCGGUCAAACUAGCGACAAAUCUCUAUAACUAAUUGACAAAGAUUAUCUCCUUUU
(((((.(((((.......((((((((.........)))))))).............(((((((((.....)).)))))))............))))).)))))............. ( -22.50, z-score =  -2.78, R)
>droYak2.chrX 8943812 116 - 21770863
UUUUGACAAUUUUAAGCGCCCAAGGUAUUCACCUCACCUUGGACUUACUUAAUCUAAUGUUGCGGUCAAACUAGCGACAAAUCUCUAUAACUAAUUUACAGGGAUCAUCUCCUUAU
...........(((((.(.(((((((.........))))))).)...))))).....((((((((.....)).)))))).((((((.(((.....))).))))))........... ( -21.40, z-score =  -1.61, R)
>droSec1.super_35 334790 116 + 471130
UUUAAACAAUUUCAAACCACCAAGGUAUUCAUCUCACCUUGGAAUUACCUAAUCUAUUGUUGCGGUCAAACUAGUGACAAAUCUCUAUAGCCAAUUUACAGAGAUCAUCUCCUUUU
...................(((((((.........)))))))..............((((..(((.....)).)..))))((((((.(((.....))).))))))........... ( -19.90, z-score =  -2.09, R)
>droSim1.chrX_random 2551264 116 + 5698898
UUUAAACAAUUUCAAACCGCCAAGGUAUUCAUCUCACCUUGGAAUUACCUAAUCUAUUGUUGCGGUCAAACUAGUGACAAAUCUCUAUAGCCAAUUUACAGAGAUCAUCUCCUUUU
...................(((((((.........)))))))..............((((..(((.....)).)..))))((((((.(((.....))).))))))........... ( -19.60, z-score =  -1.76, R)
>consensus
UUUAGACAAUUUCAAACCGCCAAGGUAUUCAUCUCACCUUGGAAUUACCUAAUCUAUUGUUGCGGUCAAACUAGUGACAAAUCUCUAUAACUAAUUUACAGAGAUCAUCUCCUUUU
...................(((((((.........)))))))..............(((((((((.....)).)))))))((((((.(((.....))).))))))........... (-17.50 = -17.66 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 8,484,977 – 8,485,093
Length 116
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 90.69
Shannon entropy 0.16574
G+C content 0.34828
Mean single sequence MFE -27.74
Consensus MFE -21.32
Energy contribution -22.20
Covariance contribution 0.88
Combinations/Pair 1.07
Mean z-score -1.93
Structure conservation index 0.77
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.30
SVM RNA-class probability 0.635873
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 8484977 116 - 22422827
AAAAGGAGAUGAUCUCUGUAAAUUAGUUAUAGAGAUUUGUCACUAGUUUGACCGCAAAAAUAGAUUAGGUAAUUCCAAGGUGAGAUGAAUACCUUGGCGGUUUGAAAGUGUCUAAA
..........(((((((((((.....))))))))))).(.((((..((.((((((.......((((....)))).(((((((.......))))))))))))).)).)))).).... ( -30.20, z-score =  -2.97, R)
>droEre2.scaffold_4690 12122459 116 + 18748788
AAAAGGAGAUAAUCUUUGUCAAUUAGUUAUAGAGAUUUGUCGCUAGUUUGACCGCAACAAUAGAUUAGGUAAUUCCAAGGUGAGCUGAAAACCUUGGAGUUUUAAAAUUGUCAAAA
.......((((((....((((((((((.((((....)))).))))).)))))..................(((((((((((.........))))))))))).....)))))).... ( -26.50, z-score =  -1.93, R)
>droYak2.chrX 8943812 116 + 21770863
AUAAGGAGAUGAUCCCUGUAAAUUAGUUAUAGAGAUUUGUCGCUAGUUUGACCGCAACAUUAGAUUAAGUAAGUCCAAGGUGAGGUGAAUACCUUGGGCGCUUAAAAUUGUCAAAA
....((.((..(((.((((((.....)))))).)).)..)).))..((((((.....(....).((((((..((((((((((.......))))))))))))))))....)))))). ( -28.90, z-score =  -2.07, R)
>droSec1.super_35 334790 116 - 471130
AAAAGGAGAUGAUCUCUGUAAAUUGGCUAUAGAGAUUUGUCACUAGUUUGACCGCAACAAUAGAUUAGGUAAUUCCAAGGUGAGAUGAAUACCUUGGUGGUUUGAAAUUGUUUAAA
.......((..(((((((((.......)))))))).)..))..((((((((((((.......((((....)))).(((((((.......)))))))))))))..))))))...... ( -25.60, z-score =  -1.07, R)
>droSim1.chrX_random 2551264 116 - 5698898
AAAAGGAGAUGAUCUCUGUAAAUUGGCUAUAGAGAUUUGUCACUAGUUUGACCGCAACAAUAGAUUAGGUAAUUCCAAGGUGAGAUGAAUACCUUGGCGGUUUGAAAUUGUUUAAA
.......((..(((((((((.......)))))))).)..))..((((((((((((.......((((....)))).(((((((.......)))))))))))))..))))))...... ( -27.50, z-score =  -1.62, R)
>consensus
AAAAGGAGAUGAUCUCUGUAAAUUAGUUAUAGAGAUUUGUCACUAGUUUGACCGCAACAAUAGAUUAGGUAAUUCCAAGGUGAGAUGAAUACCUUGGCGGUUUGAAAUUGUCUAAA
.......((((((((((((((.....))))))))).))))).((((((((..........))))))))......((((((((.......))))))))................... (-21.32 = -22.20 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:09 2011