| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,470,880 – 8,470,971 |
| Length | 91 |
| Max. P | 0.694976 |
| Location | 8,470,880 – 8,470,971 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 56.09 |
| Shannon entropy | 0.74707 |
| G+C content | 0.59100 |
| Mean single sequence MFE | -31.22 |
| Consensus MFE | -9.81 |
| Energy contribution | -10.49 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.694976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8470880 91 + 22422827 ------GUCAUUCAACUGGGAGUCCCAA-CCACUGCCACUCCGCCGGAUUCCCGGCUGCCCGGUUGCCCGG---UCUUUCGGUCAAUCGUCCGGCUCGGCA----- ------(((........((((((((...-................))))))))(((((..((((((.((((---....)))).))))))..))))).))).----- ( -34.71, z-score = -1.62, R) >droSim1.chrX 6738486 83 + 17042790 ------GUCAUUCAACUGGGAGUCCCAA-CCACUGGCACUCCGCCGGAUUCCCGG--------UUCCCCGG---UCUUUCGGUCAAUCGUCCGGCUCGGCA----- ------(((.........(((((.(((.-....))).)))))((((((....(((--------((..((((---....))))..)))))))))))..))).----- ( -34.20, z-score = -3.07, R) >droYak2.chrX 8930575 75 - 21770863 ------UUCAUUCAACUGGGAGAUUCAA-CCCGUGCCACUCCGCCGGAUUCCCUGCUGUCCGGAUGCCCGG---CUGCCUGGUCU--------------------- ------...........(((........-)))..((((..(.(((((..(((.........)))...))))---).)..))))..--------------------- ( -19.80, z-score = 0.68, R) >droEre2.scaffold_4690 12109083 96 - 18748788 ------UUCAUUCAACUGGGAGUCCCAAACCGCGGCCACUCCGCCGGAUUCCCGGAUGCCCGGAUGCCCGG---ACUUUCGGUCAAUCGUCCGUC-CGGCUCUGGA ------.........((((((((((......((((.....)))).))))))))))....(((((.(((.((---((...(((....)))...)))-))))))))). ( -40.50, z-score = -1.86, R) >droGri2.scaffold_15203 9192331 102 + 11997470 UUCUUUUUGCGACACCUGAACGACAAUUUUAUAUUUUUUUCUUUUGGGUUGUGUGCGGUUCAUUCAACCGGGCACUGUUCGGCCAAUU-UCGAGCGCAGUGAU--- .((...((((...(((..((.((.((..........)).)).))..))).((((.(((((.....))))).)))).((((((......-)))))))))).)).--- ( -26.90, z-score = -1.37, R) >consensus ______UUCAUUCAACUGGGAGUCCCAA_CCACUGCCACUCCGCCGGAUUCCCGGCUGCCCGGUUGCCCGG___CCUUUCGGUCAAUCGUCCGGC_CGGCA_____ ...............((((((((((....................))))))))))............((((.......))))........................ ( -9.81 = -10.49 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:07 2011