| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,430,985 – 8,431,036 |
| Length | 51 |
| Max. P | 0.768768 |
| Location | 8,430,985 – 8,431,036 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 77.46 |
| Shannon entropy | 0.35830 |
| G+C content | 0.41450 |
| Mean single sequence MFE | -4.89 |
| Consensus MFE | -4.54 |
| Energy contribution | -4.35 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.80 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.768768 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8430985 51 + 22422827 --CUUUCUCGUCUCCC-UUACAGAGCAUGAUUCAUGCGUAUCAAUCAAACUUUU --..............-.......(((((...)))))................. ( -4.90, z-score = -0.67, R) >droSec1.super_35 279762 51 + 471130 --CUUUCUCGUCUCCC-UUCCAGAGCAUGAUUCAUGCGUAUCAAUCAAACUUUU --..............-.......(((((...)))))................. ( -4.90, z-score = -0.71, R) >droSim1.chrX_random 2523144 51 + 5698898 --CUUUCUCGUCUCCC-UUCCAGAGCAUGAUUCAUGCGUAUCAAUCAAACUUUU --..............-.......(((((...)))))................. ( -4.90, z-score = -0.71, R) >droWil1.scaffold_181096 8857654 52 + 12416693 CCCCACCGCGCAUCUAACCUUUUUGUAUGAUUCAUGCGUAUCAAUCAAUCCU-- .......((((((....................)))))).............-- ( -4.85, z-score = -1.11, R) >consensus __CUUUCUCGUCUCCC_UUCCAGAGCAUGAUUCAUGCGUAUCAAUCAAACUUUU ........................(((((...)))))................. ( -4.54 = -4.35 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:04 2011