| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,427,018 – 8,427,119 |
| Length | 101 |
| Max. P | 0.617865 |
| Location | 8,427,018 – 8,427,119 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 87.71 |
| Shannon entropy | 0.19413 |
| G+C content | 0.35804 |
| Mean single sequence MFE | -18.67 |
| Consensus MFE | -15.98 |
| Energy contribution | -14.97 |
| Covariance contribution | -1.00 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.617865 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8427018 101 - 22422827 UCUAAAAAACUUCUAAACACAUUUAGAAA-GAUGUAUUUUUGGACAUUUCGGCGACACAAAUAGCGCAGUCACAAGAACAAAGCCAUGUGUUUGAUAUACGA ..........(((((((....))))))).-..(((((..(..(((((...(((.............................)))..)))))..).))))). ( -16.15, z-score = -0.38, R) >droEre2.scaffold_4690 12063353 96 + 18748788 -----UAAACUUCUAAACACAUUUAGAAA-CAUGUAUUUUCGGACAUUUCGGUGACAAAAAUAGCGCAACCACAAGAACAAAGCCGUAUGUUUGAUAUACGG -----.....(((((((....))))))).-..(((((..((((((((..((((.............................)))).)))))))).))))). ( -17.65, z-score = -1.76, R) >droYak2.chrX 8884151 97 + 21770863 -----GAAACUUCUAAACACAUUUAGAAACCAUGUAUUUUUGGACAUUUCGGUGACAAAAAUAGCGCAAGCACAAGAACAAAGCCAUGUGUUCGAUGUACGG -----.....(((((((....)))))))....(((((..((((((((...(((..........((....))...........)))..)))))))).))))). ( -21.90, z-score = -2.04, R) >droSec1.super_35 275893 100 - 471130 UCU-AAAAACUUCUAAACACAUUUAGAAA-GAUGUAUUUUUGGACAUUUUGGCGACAGAAAUAGCGCAGCCACAUGAACAAAGCCAUGUGUUUGAUAUACGA ...-......(((((((....))))))).-..(((((..(..(((......(((..(....)..)))....(((((........))))))))..).))))). ( -19.00, z-score = -1.30, R) >consensus _____AAAACUUCUAAACACAUUUAGAAA_CAUGUAUUUUUGGACAUUUCGGCGACAAAAAUAGCGCAACCACAAGAACAAAGCCAUGUGUUUGAUAUACGA ..........(((((((....)))))))....(((((..((((((((...(((.............................)))..)))))))).))))). (-15.98 = -14.97 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:03 2011