| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,413,581 – 8,413,713 |
| Length | 132 |
| Max. P | 0.664094 |
| Location | 8,413,581 – 8,413,713 |
|---|---|
| Length | 132 |
| Sequences | 4 |
| Columns | 155 |
| Reading direction | reverse |
| Mean pairwise identity | 77.24 |
| Shannon entropy | 0.34271 |
| G+C content | 0.34838 |
| Mean single sequence MFE | -28.59 |
| Consensus MFE | -18.51 |
| Energy contribution | -19.82 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.664094 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8413581 132 - 22422827 ----------AUAGUAAUAG-UCUUUCACAUGCAACAUGGAAAUAUUCUCCGAUCACCUUGGCCUUGAUUUUUUCAAAGUCAAGAAUGGCCGAAAAUUAUCAUCACACUGUGCUUGAAAUAAAAAA----AAUAGCUGCGAUUACAU-------- ----------...(((((.(-(.((((.((((...)))))))).......((..((.((((((.((((.....)))).))))))..))..)).......(((.(((...)))..))).........----.......)).)))))..-------- ( -22.00, z-score = 0.03, R) >droEre2.scaffold_4690 12049333 151 + 18748788 UUAGUCAUUGUUGGAAAUGGAGUUUUCACUUGCAACUUCCACGUAUUUUCUGAACACCUUGGCCUUGAUUUUUUCAAAGUCAAGGAUUGUCAAAAAUUAUCUUUAUAUUGUGCUUGAAAACGUAAA----CAAAACUGCGAUUACCUAUCAACAU ........((((((....((.(((((((..(((((.......(((.(((.(((...(((((((.((((.....)))).)))))))....))).))).))).......)))))..)))))))(((..----......))).....))..)))))). ( -32.84, z-score = -1.81, R) >droSec1.super_35 262650 136 - 471130 ----------AUAGUAAUAG-UCUUUCACCUGCAACUUGGAAGUAUUCUCCGAUCACCUUGGCCUUGCUUUUUUCGAAGUCAAGGAUCGCCGAAUAUUAUCUUCCUACUGUGCUUGAAAAAAAAGAAAAAAAAAACUGCGAUUACAU-------- ----------...(((((.(-(.(((((...(((....((((((((((..((((..(((((((.(((.......))).)))))))))))..)))))....))))).....))).)))))....((..........)))).)))))..-------- ( -29.20, z-score = -1.97, R) >droSim1.chrX 6706957 130 - 17042790 ----------AUAGUAAUAG-UCUUUCACCUGCAACUUGGAAGUAUUCUCCGAUCACCUUGGCCUUGAUUUAUUCAAAGUCAAGGAUCGCCGAAUAUUAUCUUUCUACUAUGCUUGAAAAAAAAG------AAAACUGCGAUUACAU-------- ----------...(((((.(-(.(((((...(((...(((((((((((..((((..(((((((.((((.....)))).)))))))))))..)))))).....)))))...))).)))))....((------....)))).)))))..-------- ( -30.30, z-score = -2.88, R) >consensus __________AUAGUAAUAG_UCUUUCACCUGCAACUUGGAAGUAUUCUCCGAUCACCUUGGCCUUGAUUUUUUCAAAGUCAAGGAUCGCCGAAAAUUAUCUUCAUACUGUGCUUGAAAAAAAAAA____AAAAACUGCGAUUACAU________ .......................(((((...(((....((((((((((..((((..(((((((.((((.....)))).)))))))))))..)))))))....))).....))).))))).................................... (-18.51 = -19.82 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:26:02 2011