| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,405,817 – 8,405,919 |
| Length | 102 |
| Max. P | 0.793944 |
| Location | 8,405,817 – 8,405,919 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 87.87 |
| Shannon entropy | 0.21054 |
| G+C content | 0.37707 |
| Mean single sequence MFE | -20.04 |
| Consensus MFE | -17.46 |
| Energy contribution | -18.30 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.793944 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8405817 102 + 22422827 AACGAUUUGUGGUUUAUGAACUUGGCUACGAGUCGACACAGAAACCGAAAACGCAAAUAUAUAUGCGAGAAUUCUAAUCAAACGAGUUUUUUUUGCCCCUUU ..((((((((((((.........))))))))))))....((((((((....((((........))))((....)).......)).))))))........... ( -21.90, z-score = -1.69, R) >droSim1.chrX 6699314 86 + 17042790 AACGAUUUGUGGUUUAUGAACUUGGCUGCGAGUCGACACAGAAACCGAAAACGCAAAUAAAUAUGCGAGAAUUCUAAUCAAACGAG---------------- ..(((((((..(((.........)))..)))))))................((((........))))...................---------------- ( -17.10, z-score = -1.04, R) >droSec1.super_35 254999 98 + 471130 AACGAUUUGUGGUUUAUGAACUUGGCUACGAGUCGACACAGAAACCGAAAACGCAAAUAAAUAUGCGAGAAUUCUAAUCAAACGAGUUUUUUUGCCUC---- ..((((((((((((.........)))))))))))).((.((((((((....((((........))))((....)).......)).)))))).))....---- ( -23.30, z-score = -2.15, R) >droYak2.chrX 8862622 95 - 21770863 AACGAUUUGUGGUUUAUGAACUUGGCUGCGAGUCGACACAGAAACCGAAAACGCAAAUAAAUAUGCGAGAAUUCUAAUCAAACGAGUUUUAUUUU------- ..(((((((..(((.........)))..))))))).....(((((((....((((........))))((....)).......)).))))).....------- ( -21.00, z-score = -1.54, R) >droEre2.scaffold_4690 12041683 89 - 18748788 AACGAUCUGUGGUUUAUGAACUUGGCUACGAGUCGACACAGAAACCAAAAACGCAAACACAUAUGCGAAAAUUCUAAUCAAACGAGUUU------------- ..((.((((((.....(((.((((....))))))).)))))).........((((........))))...............)).....------------- ( -16.90, z-score = -1.16, R) >consensus AACGAUUUGUGGUUUAUGAACUUGGCUACGAGUCGACACAGAAACCGAAAACGCAAAUAAAUAUGCGAGAAUUCUAAUCAAACGAGUUUU_UU_________ ..((((((((((((.........))))))))))))................((((........))))(((((((.........)))))))............ (-17.46 = -18.30 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:59 2011