| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,635,901 – 10,635,954 |
| Length | 53 |
| Max. P | 0.961384 |
| Location | 10,635,901 – 10,635,954 |
|---|---|
| Length | 53 |
| Sequences | 11 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 85.28 |
| Shannon entropy | 0.27971 |
| G+C content | 0.47067 |
| Mean single sequence MFE | -17.76 |
| Consensus MFE | -11.19 |
| Energy contribution | -11.39 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.75 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.69 |
| SVM RNA-class probability | 0.961384 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10635901 53 - 23011544 -----------GCCUAUGUGUGUUGGCCAUGUUUAUCUCUCUGGCCAACGUAUACUUAGCACAU -----------((...(((((((((((((............)))))))))))))....)).... ( -16.10, z-score = -2.62, R) >droSim1.chr2L 10433043 53 - 22036055 -----------GCCUAUGUGUGUUGGCCAUGUUUAUCUCUCUGGCCAACGUAUACUUAGCACAU -----------((...(((((((((((((............)))))))))))))....)).... ( -16.10, z-score = -2.62, R) >droSec1.super_3 6054061 53 - 7220098 -----------GCCUAUGUGUGUUGGCCAUGUUUAUCUCUCUGGCCAACGUAUACUUAGCACAU -----------((...(((((((((((((............)))))))))))))....)).... ( -16.10, z-score = -2.62, R) >droYak2.chr2L 7038736 53 - 22324452 -----------ACGUGUGUGUGUUGGCCAUGUUUAUCUCUCUGGCCAACGUAUACUUAGCACAU -----------....((((((((((((((............))))))))))))))......... ( -17.80, z-score = -2.80, R) >droEre2.scaffold_4929 11841770 53 + 26641161 -----------GCGCGUGUGUGUUGGCCAUGUUUAUCUCUCUGGCCAACGUACACUUAGCACAU -----------((..((((((((((((((............))))))))))))))...)).... ( -22.40, z-score = -4.06, R) >droAna3.scaffold_12916 14478074 53 - 16180835 -----------CUGCGUGUGUGUUGGCCAUGUUUAUCUCCCUGGCCAACGUAUACUUAGCACAU -----------(((.((((((((((((((.(........).)))))))))))))).)))..... ( -19.70, z-score = -3.43, R) >dp4.chr4_group4 2833906 51 - 6586962 -----------GUGCGUGUGUGUUGGCCGUGUUUAUCUCUC--GCCAACGUAUACUUAGCACAU -----------((((((((((((((((.(.(.......).)--))))))))))))...)))).. ( -18.30, z-score = -3.07, R) >droPer1.super_10 1844269 51 - 3432795 -----------GUGCGUGUGUGUUGGCCGUGUUUAUCUCUC--GCCAACGUAUACUUAGCACAU -----------((((((((((((((((.(.(.......).)--))))))))))))...)))).. ( -18.30, z-score = -3.07, R) >droWil1.scaffold_180708 10710079 63 - 12563649 GCGUGAGUUUUGGGUG-GAGUGUUGGCCAUGUUUAUCUCUAUGGUCAACGUAUACUUAGCACAU ......((.(((((((-...(((((((((((........)))))))))))..))))))).)).. ( -20.00, z-score = -2.36, R) >droVir3.scaffold_12963 9852806 51 + 20206255 -----------GGUUGUGCGUGUUGGCCAUGUUUAUCUCU--GGUCAACGUAUACUUAGCACAU -----------...(((((..((((((((.(.......))--)))))))(....)...))))). ( -15.40, z-score = -2.05, R) >droGri2.scaffold_15252 8766102 51 + 17193109 -----------GGCUGUGCGUGUUGCCCAUGUUUAUCUCU--GGUCAACGUGUACUUAGCACAU -----------.(((((((((((((.(((.(.......))--)).))))))))))..))).... ( -15.20, z-score = -1.54, R) >consensus ___________GCGUGUGUGUGUUGGCCAUGUUUAUCUCUCUGGCCAACGUAUACUUAGCACAU ................((((((((((((..............)))))))))))).......... (-11.19 = -11.39 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:37 2011