| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,402,653 – 8,402,746 |
| Length | 93 |
| Max. P | 0.593527 |
| Location | 8,402,653 – 8,402,746 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 96.77 |
| Shannon entropy | 0.05870 |
| G+C content | 0.39140 |
| Mean single sequence MFE | -21.58 |
| Consensus MFE | -19.80 |
| Energy contribution | -19.08 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.593527 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8402653 93 + 22422827 UGUAUUUUCUAGUUGUCAAAGCCAAGUGGCGGCAAUUUAUUGUGUCCAACUGUUGUCAACGCGUUGGCAAAUAAGCAAUAUUAAAAUCUUAUC ...........(((((....((((((((..((((((...(((....)))..))))))..))).)))))......))))).............. ( -18.80, z-score = -0.95, R) >droSim1.chrX 6696169 93 + 17042790 UGUGGUUUCUGGUUGUCAAAGCCAAGUGGCGGCAAUUUAUUGUGUCCAACUGUUGUCAACGCGUUGGCAAAUAAGCAAUAUUAAAAUCUUAUC ...(((((...(((((....((((((((..((((((...(((....)))..))))))..))).)))))......)))))....)))))..... ( -21.20, z-score = -0.88, R) >droSec1.super_35 251949 93 + 471130 UGUGGUUUCUGGUUGUCAAAGCCAAGUGGCGGCAAUUUAUUGUGUCCAACUGUUGUCAACGCGUUGGCAAAUAAGCAAUAUUAAAAUCUUAUC ...(((((...(((((....((((((((..((((((...(((....)))..))))))..))).)))))......)))))....)))))..... ( -21.20, z-score = -0.88, R) >droYak2.chrX 8859328 93 - 21770863 UGUAGUUUCCCGUUGUCAAAGCCAAGUGGCGGCAAUUUAUUGUGUCCAACGGUUGUCAACGCGUUGGCAAAUAAGCAAUAUUAAAAUCUUAUC ....((((.((((((.....(((....)))((((........))))))))))(((((((....)))))))..))))................. ( -22.30, z-score = -1.71, R) >droEre2.scaffold_4690 12038567 93 - 18748788 UGUUGUUUCCAGUUGUCAAAGCCAAGUGGCGGCAAUUUAUUGUGUCCAACUGUUGUCAACGCGUUGGCAAAUAAGCAAUAUUAAAAUCUUAUC ((((((((.((((((.....(((....)))((((........))))))))))(((((((....)))))))..))))))))............. ( -24.40, z-score = -2.56, R) >consensus UGUAGUUUCUAGUUGUCAAAGCCAAGUGGCGGCAAUUUAUUGUGUCCAACUGUUGUCAACGCGUUGGCAAAUAAGCAAUAUUAAAAUCUUAUC (((......((((((.....(((....)))((((........))))))))))(((((((....)))))))....)))................ (-19.80 = -19.08 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:59 2011