| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,395,743 – 8,395,850 |
| Length | 107 |
| Max. P | 0.971986 |
| Location | 8,395,743 – 8,395,850 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 133 |
| Reading direction | forward |
| Mean pairwise identity | 62.42 |
| Shannon entropy | 0.57701 |
| G+C content | 0.37701 |
| Mean single sequence MFE | -31.18 |
| Consensus MFE | -12.10 |
| Energy contribution | -13.54 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.86 |
| SVM RNA-class probability | 0.971986 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8395743 107 + 22422827 UACUAAACCU--UUCUGAAUUGG-------------GGUUUCGUUU--GCAAUAGCAAAUCCUUGUUAAU---------UUUAAUAAGUUAGCUGAUCUUCAGCUAGUUCCUUUGGCAUCAUAAGGAUAAUCU ....((((((--(........))-------------))))).((((--((....)))))).(((((((..---------..)))))))(((((((.....))))))).(((((((....)).)))))...... ( -24.80, z-score = -1.94, R) >droYak2.chrX 8851794 130 - 21770863 ---UGCACCUGCUUCCUGUGGGGGUUUUUCUUUGUAGCCGCCCUCUUUUGUGAAGAAAAACCCUAUUGAUAAAAUUAUGUUUGAUAAGCUAGAGUUUCUACAGCUAGUUGCAUUUGCAUUCGCAGGAUAAUCC ---.((....)).(((((((((((((((((((..(((..........)))..))))))))))))............((((.((...((((((.((....))..)))))).))...)))).)))))))...... ( -37.60, z-score = -2.52, R) >droSec1.super_35 245096 103 + 471130 ---UGCACCU--UUCUGAAGGGGA-----------AGGUUCUCUUCCAGCAAAAGUAAAUCCUUGUUAAU---------UAAAAUAAGUUAACUGAUCUUCAGCUAGUUCCUUUUGCAUCAUCAGGAU----- ---.......--((((((.(((((-----------((.....))))).(((((((......((((((...---------...))))))(((.(((.....))).)))...))))))).)).)))))).----- ( -24.70, z-score = -1.68, R) >droSim1.chrX 6689075 119 + 17042790 ---UGCACCU--UCCUGAAGGGGGUUUUGUUUGCAACACCCUCUUUUAGCAAAAGUUAAUCCUUGUUAAG---------UAAAAUAAGUUAGCUGAUCUUCAGCUAGUUCCUUUGGCAUCAUCAGGAUAAGCU ---.((....--(((((((((((((.(((....))).)))))))....((.((((......((((((...---------...))))))(((((((.....)))))))...)))).))....))))))...)). ( -37.60, z-score = -3.35, R) >consensus ___UGCACCU__UUCUGAAGGGGG___________AGGCUCCCUUUUAGCAAAAGUAAAUCCUUGUUAAU_________UAAAAUAAGUUAGCUGAUCUUCAGCUAGUUCCUUUGGCAUCAUCAGGAUAAUCU .......(((......((((((((..............))))))))........(((((..((((((((...........))))))))(((((((.....))))))).....)))))......)))....... (-12.10 = -13.54 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:56 2011