| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,391,318 – 8,391,412 |
| Length | 94 |
| Max. P | 0.562972 |
| Location | 8,391,318 – 8,391,412 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 81.71 |
| Shannon entropy | 0.31021 |
| G+C content | 0.41795 |
| Mean single sequence MFE | -21.60 |
| Consensus MFE | -15.99 |
| Energy contribution | -17.64 |
| Covariance contribution | 1.65 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.562972 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8391318 94 + 22422827 GAUUAGAUUCGCAUAUGUACA-----AUGUACCUGCAUACAUAUUUGUCACAUAUGUAGCUUUGUGUAAACACAGGCUCCA------CUCCAUGGCCUCCAUCGU ..........(((((((((((-----(((((......)))))...))).))))))))(((((.(((....))))))))...------....((((...))))... ( -19.50, z-score = -0.42, R) >droEre2.scaffold_4690 12027247 99 - 18748788 GAUUAGAUUCGCAUAUGUACCUAUGUAUGUAUAUAUGUACAUAUUUGUCACACAUGUAGCUCUGUGUAAAUACAGGCUCCA------CUUCAAGGUCUCCACCAA .....(((....((((((((.(((((....))))).))))))))..))).....((.(((.(((((....)))))))).))------......(((....))).. ( -22.20, z-score = -1.09, R) >droYak2.chrX 8847356 89 - 21770863 GAUUAGAUACGCAUAUGCACC----------------UACAUAUUGGUCACACAUCUAGCUCUGUGUAAGUACAGGCUCCAAACCCACUCCAAGGUCUCCAGCAA ..((((((..((....))(((----------------........))).....))))))..(((((....)))))(((....(((........)))....))).. ( -15.10, z-score = 0.27, R) >droSec1.super_35 240747 94 + 471130 GAUUAGAUUCGCAUAUGUGCA-----AUGUAUCUACGUACAUAUUUGUCACAUAUGUAGCUCUGUGUAAACACAGGCUCCA------CUCCAAGGUCUCCACCGU ..........(((((((((((-----((((((....))))))...)).)))))))))(((.(((((....))))))))...------......(((....))).. ( -26.60, z-score = -2.95, R) >droSim1.chrX 6684010 94 + 17042790 GAUUAGAUUCGCAUAUGUACA-----AUGUAUCUACGUACAUAUUUGUCACAUAUGUAGCUCUGUGUAAACACAGGCUCCA------CUCCAAGGUCUCCACCGU ..........(((((((((((-----((((((....))))))...))).))))))))(((.(((((....))))))))...------......(((....))).. ( -24.60, z-score = -2.65, R) >consensus GAUUAGAUUCGCAUAUGUACA_____AUGUAUCUACGUACAUAUUUGUCACAUAUGUAGCUCUGUGUAAACACAGGCUCCA______CUCCAAGGUCUCCACCGU ((((......(((((((((((.....((((((....))))))...))).))))))))(((.(((((....))))))))...............))))........ (-15.99 = -17.64 + 1.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:54 2011