| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,386,735 – 8,386,836 |
| Length | 101 |
| Max. P | 0.598354 |
| Location | 8,386,735 – 8,386,836 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 87.38 |
| Shannon entropy | 0.20244 |
| G+C content | 0.46448 |
| Mean single sequence MFE | -26.84 |
| Consensus MFE | -21.22 |
| Energy contribution | -21.18 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.598354 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8386735 101 + 22422827 ----------UGCUUCGC-CGAAAUGGCGUUUAACUUCUUGCUUGAGUUGGCCCGACUUCACUUGACUCCCAACUUGGUGCCAUUUGUUUAUUUUCUGUAAACACGCCAGCG--- ----------........-((...((((((..........(((..((((((..(((......)))....))))))..).)).....((((((.....)))))))))))).))--- ( -24.30, z-score = -1.41, R) >droSim1.chrX 6676684 102 + 17042790 ----------UGCAGUGUACUGCUUGGCGUUUAACUUCUUGCUUGAGUUGGCCCGACUUCACUUGACUCCCAACUUGGUGCCAUUUGUUUAUUUUCUGUAAACACGCCAGUG--- ----------.((((....))))(((((((..........(((..((((((..(((......)))....))))))..).)).....((((((.....)))))))))))))..--- ( -28.70, z-score = -2.32, R) >droSec1.super_35 235497 102 + 471130 ----------UGCAGUGUACUGCUUGGCGUUUAACUUCUUGCUUGAGUUGGCCCGACUUCACUUGACUCCCAACUUGGUGCCAUUUGUUUAUUUUCUGUAAACACGCCAGUG--- ----------.((((....))))(((((((..........(((..((((((..(((......)))....))))))..).)).....((((((.....)))))))))))))..--- ( -28.70, z-score = -2.32, R) >droYak2.chrX 8843349 114 - 21770863 AGUGCAACACUGCUUAGC-CGACAUGGCGUUUAACUUCUUGCUUGAGUUGGCCCGACUUCACUUGACUCCCAACUUAGUGCCAUUUGUUUAUUUUGUGUAAACACGCCAGUGGCG ...(((....)))...((-((...((((((..........(((((((((((..(((......)))....))))))))).)).....((((((.....)))))))))))).)))). ( -32.50, z-score = -1.78, R) >droEre2.scaffold_4690 12023170 104 - 18748788 -------CACUGCUUAGC-CGACAUGCCGUUUAACUUCUUGCUUGAGUUGGCCCGACUUCACUUGACUCCCAACUUAGUGCCAUUUGUUUAUUUUGUGUAAACACGACAGUG--- -------(((((....((-......))(((..........(((((((((((..(((......)))....))))))))).)).....((((((.....))))))))).)))))--- ( -20.00, z-score = -0.44, R) >consensus __________UGCUUAGC_CGACAUGGCGUUUAACUUCUUGCUUGAGUUGGCCCGACUUCACUUGACUCCCAACUUGGUGCCAUUUGUUUAUUUUCUGUAAACACGCCAGUG___ ........................((((((..........(((((((((((..(((......)))....))))))))).)).....((((((.....))))))))))))...... (-21.22 = -21.18 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:54 2011