| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,383,567 – 8,383,619 |
| Length | 52 |
| Max. P | 0.648310 |
| Location | 8,383,567 – 8,383,619 |
|---|---|
| Length | 52 |
| Sequences | 6 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 75.64 |
| Shannon entropy | 0.45396 |
| G+C content | 0.48397 |
| Mean single sequence MFE | -9.05 |
| Consensus MFE | -6.31 |
| Energy contribution | -6.20 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.17 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.648310 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8383567 52 - 22422827 GGCAUCCUUCCAGGCACUGGAAGUUCGUUCUUAUACUUUUCGUUCGCAUUCU .((...(((((((...)))))))...((......)).........))..... ( -9.70, z-score = -1.46, R) >droEre2.scaffold_4690 12019993 52 + 18748788 UGCAUCCUUCCAGCCGCUGGAAGUUCCAUCUCGCACUUUCCGUUCGCAUUCU (((...(((((((...))))))).........(.((.....)).)))).... ( -10.00, z-score = -1.43, R) >droYak2.chrX 8840083 52 + 21770863 CGCAUCCUUCCAGCCGCUGGAAGUUCCUUCUCGCACUUUCCGUUUGCAUUCU ......(((((((...))))))).........(((.........)))..... ( -9.40, z-score = -1.15, R) >droSec1.super_35 232356 52 - 471130 UGCAUCCUUCCAGGUAAUGGAAGUUCGUUCAGGCACAUUCCGAUUGCAUUCU ((((((((((((.....))))))........((......)))).)))).... ( -11.40, z-score = -0.95, R) >droSim1.chrX 6673475 52 - 17042790 UGCAUCCUUCCAGGUAAUGGAAGUUCGUUCAGGCACAUUCCGAUUGCAUUCU ((((((((((((.....))))))........((......)))).)))).... ( -11.40, z-score = -0.95, R) >anoGam1.chr3R 25615054 52 - 53272125 CCCAUAUUUCCAGCCAUUGGUAAUCCCUUUGCAUACGUUUCGUUCACCCUUU ............((.(..((....))..).)).................... ( -2.40, z-score = 0.36, R) >consensus UGCAUCCUUCCAGCCACUGGAAGUUCCUUCUCGCACUUUCCGUUCGCAUUCU ......((((((.....))))))............................. ( -6.31 = -6.20 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:53 2011