| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,379,002 – 8,379,064 |
| Length | 62 |
| Max. P | 0.754601 |
| Location | 8,379,002 – 8,379,064 |
|---|---|
| Length | 62 |
| Sequences | 5 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 89.19 |
| Shannon entropy | 0.18955 |
| G+C content | 0.41423 |
| Mean single sequence MFE | -14.27 |
| Consensus MFE | -12.40 |
| Energy contribution | -12.52 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.754601 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8379002 62 + 22422827 CGUAAUUGCAGCACCUGCAAAAGUCUUUUGUACAUUUUGUCUCUUGCGCUGCAGUUGAAUCU ..((((((((((....((((.((.(.............).)).))))))))))))))..... ( -16.62, z-score = -2.06, R) >droSim1.chrX 6669319 61 + 17042790 CGUAAUUGCAGCACCUGCAAAA-UCUUUUGUACAUUUUGUCUCUUGCGCUGCAGUUGAAUCU ..((((((((((...((((((.-...))))))......((.....))))))))))))..... ( -15.70, z-score = -2.18, R) >droSec1.super_35 227859 62 + 471130 CGUAAUUGCAGCACCUGCAAAAGUCUUUUGUACAUUUUGUCUCUUGCGCUGCAGUUGAAUCU ..((((((((((....((((.((.(.............).)).))))))))))))))..... ( -16.62, z-score = -2.06, R) >droYak2.chrX 8835579 62 - 21770863 CGUAAUUGCAGCACCUGCAAAAGUCUUUUGUACAUUUUGUCUUUUGCGUUGCACUCGAAUCU ((....((((((....(((((((.(.............).)))))))))))))..))..... ( -13.82, z-score = -1.60, R) >droEre2.scaffold_4690 12015426 62 - 18748788 CGUAAUUGCAGCACCUGCAUGUCUUUUGUACAUCUUUUGUCUUUUGCGUUGCACUCGAAUCU .(((((.(((((....))(((((....).))))...........)))))))).......... ( -8.60, z-score = 0.32, R) >consensus CGUAAUUGCAGCACCUGCAAAAGUCUUUUGUACAUUUUGUCUCUUGCGCUGCAGUUGAAUCU ..((((((((((...((((((.....))))))......((.....))))))))))))..... (-12.40 = -12.52 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:52 2011