| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,355,599 – 8,355,651 |
| Length | 52 |
| Max. P | 0.982065 |
| Location | 8,355,599 – 8,355,651 |
|---|---|
| Length | 52 |
| Sequences | 6 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 64.06 |
| Shannon entropy | 0.68271 |
| G+C content | 0.59289 |
| Mean single sequence MFE | -13.85 |
| Consensus MFE | -8.31 |
| Energy contribution | -7.45 |
| Covariance contribution | -0.86 |
| Combinations/Pair | 1.89 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.09 |
| SVM RNA-class probability | 0.982065 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8355599 52 + 22422827 GGCAAUGAGCGCCACGACUAGAACACCUGCCACACCGGGGACACCUGGCACU ((((.((..(..........)..))..))))...(((((....))))).... ( -12.80, z-score = -0.67, R) >droPer1.super_17 354730 51 + 1930428 GGUAAAAAGGAUUA-AAGGACAAUGUCUGAGACGCCACGUACACCUGGCACC (((...........-..((((...)))).....((((.(....).))))))) ( -8.90, z-score = -0.01, R) >dp4.chrXL_group1e 3417920 51 + 12523060 GGUAAAAAGGAUUA-AAGGACAAUGUCUGAGACGCCACGUACACCUGGCACC (((...........-..((((...)))).....((((.(....).))))))) ( -8.90, z-score = -0.01, R) >droAna3.scaffold_13248 2282256 52 - 4840945 CGCCAUGUCCGAGACUCCCAGGACGCCAGCCACACCGGGAACUCCCGGUACA .((..(((((..........)))))...))...((((((....))))))... ( -18.00, z-score = -1.84, R) >droEre2.scaffold_4690 11993588 52 - 18748788 GGCGAUGAGCGUCACACCACGCACACCUGCCACUCCGGGCACACCUGGAACU ((((.((.((((......)))).))..))))..((((((....))))))... ( -19.40, z-score = -2.97, R) >droSec1.super_35 204426 52 + 471130 GGCGAUGAGUGCCACGACUAGAACACCUGUCACACCGGGCACACCUGGCACU .......(((((((.(((.((.....))))).....((.....))))))))) ( -15.10, z-score = -1.01, R) >consensus GGCAAUGAGCGUCACAACGAGAACACCUGCCACACCGGGCACACCUGGCACU (((.......)))....................((((((....))))))... ( -8.31 = -7.45 + -0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:50 2011