| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,629,053 – 10,629,162 |
| Length | 109 |
| Max. P | 0.875246 |
| Location | 10,629,053 – 10,629,162 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 79.89 |
| Shannon entropy | 0.36671 |
| G+C content | 0.55097 |
| Mean single sequence MFE | -22.95 |
| Consensus MFE | -16.20 |
| Energy contribution | -16.12 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.875246 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10629053 109 + 23011544 CCCCAUUCCCCCACUUUUCCCAUCCAGUUUUCCCUCCCGGGAAAACUUGCCCCCGCAAAACUAACCAACAGCUGCUAAGCGUUGAGUAAAUGUUUUCGCGCCUCGUUGC .........................(((((((((....)))))))))......((((((((..((((((.(((....))))))).))....))))).)))......... ( -25.20, z-score = -3.42, R) >droSim1.chr2L 10425601 108 + 22036055 CCCCAUUCCACCAGAUUUCCCCGCCAGUUUUCCCUCCCGGGAAAACUUGCCCCCGCAAA-CUAACCAACAGCUGCUAAGCGUUGAGUAAAUGUUUUCGCGCCUCGUUGC ......................((.(((((((((....))))))))).))...((((((-(..((((((.(((....))))))).))....))))..)))......... ( -26.20, z-score = -2.79, R) >droSec1.super_3 6047186 84 + 7220098 -------------------CC--CCA---UUCCCUCCCGGGAAAACUUGCCCCCGCAAA-CUAACCAACAGCUGCUAAGCGUUGAGUAAAUGUUUUCGCGCCUCGUUGC -------------------..--...---(((((....)))))...((((....)))).-.....((((((.(((.(((((((.....)))))))..))).)).)))). ( -19.40, z-score = -1.59, R) >droYak2.chr2L 7031862 97 + 22324452 ---------CCCCGUUUCCCC--CCAGGUUUUCCUCCCGGGAAAACUUGCCCCCGCAAA-CUAACCAACAGCUGCUAAGCGUUGAGUAAAUGUUUUCGCGCCUCGUUGC ---------....(((((...--.((((((((((.....)))))))))).....).)))-)....((((((.(((.(((((((.....)))))))..))).)).)))). ( -23.80, z-score = -1.68, R) >droEre2.scaffold_4929 11834929 106 - 26641161 CCCCAUGCCCCCAGUUUUCCC--CCAGGUUUCCCUCCCGGGAAAACUUGCCCCCGCAAA-CUAACCAGCAGCUGCUAAGCGUUGAGUAAAUGUUUUCGCGCCUCGUUGC .............((((((((--..(((....)))...))))))))((((....)))).-.....((((((.(((.(((((((.....)))))))..))).)).)))). ( -26.20, z-score = -1.73, R) >droAna3.scaffold_12916 14471416 84 + 16180835 -----------------------CUGGCCCCGCUGCCCCUGGAAACUUGGCCC-ACAAA-CUAACCAACAGCUGCUAAGUGUUGAGUAAAUGUUUUCGCGCCUCGUUGC -----------------------..(((...((.(((...(....)..)))..-..(((-(..(((((((.((....))))))).))....))))..)))))....... ( -16.90, z-score = 1.13, R) >consensus _________CCCAGUUUUCCC__CCAGGUUUCCCUCCCGGGAAAACUUGCCCCCGCAAA_CUAACCAACAGCUGCUAAGCGUUGAGUAAAUGUUUUCGCGCCUCGUUGC .....................................((.((((((((((....)))).....((((((.(((....))))))).))....)))))).))......... (-16.20 = -16.12 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:36 2011