| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,312,728 – 8,312,830 |
| Length | 102 |
| Max. P | 0.771321 |
| Location | 8,312,728 – 8,312,830 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 69.38 |
| Shannon entropy | 0.53910 |
| G+C content | 0.36701 |
| Mean single sequence MFE | -22.45 |
| Consensus MFE | -10.22 |
| Energy contribution | -10.33 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.771321 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8312728 102 + 22422827 UGUGCACCCAAAGUUGAAGUCUGCUAAAGUA----GAUGCUGUAAUUGGGAAACGUGACUGCUAAAUUAGCAGUACGAAAAUUGUUACAGAUAACAU-----CCGAAAUUU------- (((((((((((.......((((((....)))----))).......)))))...((((.((((((...)))))))))).....)).))))........-----.........------- ( -26.24, z-score = -2.70, R) >droAna3.scaffold_13334 560675 99 - 1562580 UGUGCACCCAAAAGU---GCUAAGUGGAAUACA-AGAUGCUGUAAUUGGGGAGCGUGACUGUUAAAUUAACAG-----AGACUGUUACAGAAUCGUU----UUUAUAAUUUC------ ...((((......))---))...((((((....-.(((.(((((((.((....)....((((((...))))))-----...).))))))).)))..)----)))))......------ ( -19.00, z-score = 0.08, R) >droYak2.chrX 8767892 112 - 21770863 UAAGCACCCAAAGUCU--GCUAAAGUAUGUA----GAUGCUGUAACUGAAAAACGUGACUGCUAAAUUAGCAGUGCGAAAAUUGUUACAGAUAAUAUAACUCUCGACAUCCGAAAUUU ............((((--((........)))----))).(((((((.......(((.(((((((...))))))))))......)))))))............(((.....)))..... ( -26.02, z-score = -3.00, R) >droEre2.scaffold_4690 11951707 96 - 18748788 UGUGCACCCAAAGUUAAAAUCUGCUAAAGUACAUAGAUGCUGUAAUUGGUAAACGUGACUGCUAAAUUAGCAGACGGAAAAUUGUUACAGACAUCU---------------------- (((((......((.......))......))))).((((((((((((.......(((..((((((...))))))))).......))))))).)))))---------------------- ( -24.64, z-score = -2.56, R) >droSec1.super_35 162222 94 + 471130 UGUGCACCCAAAGUUGAAGUCUGCUAAAGUA----GAUGCUGUAAUUGAGAAACGUGAGUGCUAAGUUAGCA--------AUUGUUACAGAUUACAU-----UCGAAAUUU------- .............(((((((((((....)))----))).(((((((......((....))((((...)))).--------...)))))))......)-----)))).....------- ( -19.60, z-score = -0.84, R) >droSim1.chrX_random 2491357 94 + 5698898 UGUGCACCCAAAGUUGAAGUCUGCUAAAGUA----GAUGCUGUAAAUGGGAAACGUGAGUGCUAAGUUAGCA--------AUUGUUACAGAUUACAU-----UCGAAAUUU------- .((...((((...(((..((((((....)))----)))....))).))))..)).((((((.(((..((((.--------...))))....))))))-----)))......------- ( -19.20, z-score = -0.36, R) >consensus UGUGCACCCAAAGUUGAAGUCUGCUAAAGUA____GAUGCUGUAAUUGGGAAACGUGACUGCUAAAUUAGCAG_____AAAUUGUUACAGAUAACAU_____UCGAAAUUU_______ .......................................(((((((............((((((...))))))..........)))))))............................ (-10.22 = -10.33 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:47 2011