| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,279,358 – 8,279,437 |
| Length | 79 |
| Max. P | 0.634255 |
| Location | 8,279,358 – 8,279,437 |
|---|---|
| Length | 79 |
| Sequences | 4 |
| Columns | 79 |
| Reading direction | reverse |
| Mean pairwise identity | 83.33 |
| Shannon entropy | 0.26235 |
| G+C content | 0.59469 |
| Mean single sequence MFE | -19.13 |
| Consensus MFE | -14.45 |
| Energy contribution | -15.45 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.634255 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8279358 79 - 22422827 CAACGCUGCUAAUCCGAGUCAACCACUCACUCCAACCCGCCGGGUAGCCAACGUCAUGGACUCACGAAAAAGCAGUCAU ....((((((..((.(((((..............((((...)))).............)))))..))...))))))... ( -17.13, z-score = -1.24, R) >droSim1.chrX 6606699 75 - 17042790 CAACGCUGCUAAUCCGAGUCAAC----CACUCCAGCCCGCCGGGUUGCCAGCGCCGUGGACCCACGAAAAGGCAGCCAU ....((((((.....((((....----.))))((((((...)))))).......((((....))))....))))))... ( -24.20, z-score = -1.26, R) >droSec1.super_35 128880 72 - 471130 CAACGCUGCUAAUCCGAGU---C----CACUCCAACCCGCCGGGUUGCCAGCGCCGUGGACCCACGAAAAGGCAGCCAU ....((((((....((.((---(----(((...(((((...)))))((....)).))))))...))....))))))... ( -24.00, z-score = -1.67, R) >droEre2.scaffold_4690 10644110 72 - 18748788 CAACGCUGCUAAUCCGAGUCAAC----CAUUCCAAUCCGCCGA---GCCCACUCCAUGACCCCACGAAAAAGCAGCCAU ....((((((.....((((....----.)))).........((---(....)))................))))))... ( -11.20, z-score = -2.18, R) >consensus CAACGCUGCUAAUCCGAGUCAAC____CACUCCAACCCGCCGGGUUGCCAACGCCAUGGACCCACGAAAAAGCAGCCAU ....((((((.....((((.........))))((((((...)))))).......((((....))))....))))))... (-14.45 = -15.45 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:40 2011