| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,271,357 – 8,271,449 |
| Length | 92 |
| Max. P | 0.911616 |
| Location | 8,271,357 – 8,271,449 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 80.75 |
| Shannon entropy | 0.32876 |
| G+C content | 0.36191 |
| Mean single sequence MFE | -15.00 |
| Consensus MFE | -8.93 |
| Energy contribution | -9.13 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.911616 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8271357 92 + 22422827 UUUAGCCCACCUUUCAAAGUGACCUCCAUUAACUUUGCUUUGACCAGAACUGCAUAAUUUAUGUGCAUUUAAAGCAAAAAAAAAAACAGAAG ............(((..((((.....))))...((((((((((.......((((((.....)))))).))))))))))..........))). ( -13.50, z-score = -1.30, R) >droSim1.chrX_random 2481086 85 + 5698898 ---AGCCU-CCUUUCAAAGUGACCUCCAUUAACUUAGCUUUGACCAGAACUGCAUAAUUUAUGUGCAUUUAAACAAAAAAAAGAAGGAG--- ---...((-(((((((((((................))))))).......((((((.....))))))................))))))--- ( -16.29, z-score = -2.00, R) >droSec1.super_35 121060 84 + 471130 ---AGCCU-CCUUUCAAAGUGACCUCCAUUAACUUAGCUUUGACCAGAGCUGCAUAAUUUAUGUGCAUUUAAACAAAAAAAA-AAGGAG--- ---...((-(((((.....((..............((((((....))))))(((((.....))))).......))......)-))))))--- ( -17.50, z-score = -2.23, R) >droYak2.chrX 8728157 80 - 21770863 UGUAGCCC-CCUGCCAAAGUGACCUCCAUUAACUUCGCUUUGACCAGAACUGCAUAAUUUAUGUGCAUUUAAAACUACAAG----------- (((((...-.(((.((((((((............))))))))..)))...((((((.....)))))).......)))))..----------- ( -18.40, z-score = -4.19, R) >droEre2.scaffold_4690 10636562 80 + 18748788 UCCCGCAU-CCUUUCAAAGUAACCUUCAUUAACUUCGCUUUGACCACAACUGCAUAAUUUAUGUGCAUUUAAAAAUACAAG----------- ........-....(((((((................))))))).......((((((.....))))))..............----------- ( -9.29, z-score = -2.03, R) >consensus U__AGCCU_CCUUUCAAAGUGACCUCCAUUAACUUAGCUUUGACCAGAACUGCAUAAUUUAUGUGCAUUUAAAAAAAAAAAA_AA__AG___ .............(((((((................))))))).......((((((.....))))))......................... ( -8.93 = -9.13 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:40 2011