| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,263,661 – 8,263,727 |
| Length | 66 |
| Max. P | 0.556247 |
| Location | 8,263,661 – 8,263,727 |
|---|---|
| Length | 66 |
| Sequences | 3 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 74.49 |
| Shannon entropy | 0.34784 |
| G+C content | 0.37184 |
| Mean single sequence MFE | -15.13 |
| Consensus MFE | -8.14 |
| Energy contribution | -8.03 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.556247 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8263661 66 - 22422827 CGAUUUGCAUCCAAAUUUGGGAAAUCUAGGUUUUUUCAAUUUUUUGCAAAUUUUGAUGAUGUUACC .((((((((...(((((..((((((....))))))..)))))..)))))))).............. ( -12.60, z-score = -1.14, R) >dp4.chrXR_group3a 588473 64 - 1468910 CGAUUGGCAUCAGAAAAUAGGACAUUCGUGUCCUCACGAUUUUCGGCAAAAAUC-AUGAUGUAAC- ......((((((......((((((....))))))...((((((.....))))))-.))))))...- ( -16.50, z-score = -2.22, R) >droPer1.super_23 799664 64 - 1662726 CGAUUGGCAUCAGAAAAAAGGACAUCCAUGUCCUCACGAUUUUCGGCAAAAAUC-AUGAUGUAAC- ......((((((......((((((....))))))...((((((.....))))))-.))))))...- ( -16.30, z-score = -2.42, R) >consensus CGAUUGGCAUCAGAAAAUAGGACAUCCAUGUCCUCACGAUUUUCGGCAAAAAUC_AUGAUGUAAC_ ......(((((.......(((((......)))))...((((((.....))))))...))))).... ( -8.14 = -8.03 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:37 2011