| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,617,571 – 10,617,670 |
| Length | 99 |
| Max. P | 0.573317 |
| Location | 10,617,571 – 10,617,670 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 68.18 |
| Shannon entropy | 0.56134 |
| G+C content | 0.31528 |
| Mean single sequence MFE | -19.86 |
| Consensus MFE | -9.02 |
| Energy contribution | -8.82 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.573317 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10617571 99 - 23011544 AAAUUGCGAGUAUUAAGUUACUCAUGAGCGGCA---GGAAACGUUGAAAGUUGGCUUUAAUAUAGCAGUUAACCAUUUUGACUGUUUUUUUUUUUAAAUUAU .....(((((((......))))).....((((.---(....))))).......))........(((((((((.....)))))))))................ ( -18.60, z-score = -0.58, R) >droAna3.scaffold_12916 14456757 99 - 16180835 AAAUUGUAAACAUUGCUGGAAAUAAAAUAAACACAUGGAAACAAGCAAAAAUGUUUUUUUAGUUCUGAAUAAUAAGCAUAAAUCAUAUUCUCCAAGAAG--- ................((((((((...........((....)).......((((((.((((....))))....))))))......)))).)))).....--- ( -10.30, z-score = 0.43, R) >droYak2.chr2L 7020068 96 - 22324452 AAAUUGUGAGUAUCAAGUUACUCACGAGCUGCA---GGAAACAUCGAGAGUUGGCUUUAAUUUAGCAGUUAAAUAUUUUAAAUG---UUCUCUGUAAACGAU ...(((((((((......)))))))))..((((---(..(((((..(((((....((((((......)))))).)))))..)))---))..)))))...... ( -26.00, z-score = -2.99, R) >droSec1.super_3 6035653 96 - 7220098 AAAUUGCGAGUAUUAAGUUACUCAUGUGCGACA---GGAAACGUCGAAAGCGGGCUUUAAUAUAGCAGUUAAACAUCUUGACUG---UUUACUUUAAAUUAU .....(((((((......))))).(((.((((.---(....)))))...))).))(((((...(((((((((.....)))))))---))....))))).... ( -25.20, z-score = -2.75, R) >droSim1.chr2L 10414080 96 - 22036055 AAAUUGCGAGUAUUAAGUUACUCAUGUGCGGCA---GGAAACGUCGAAAGCUGGCUUUAAUAUAGCAGUUAACCAUCUUGAAUG---UUUUCUUUAAAUUAU .(((((((((((......)))))..((.((((.---(....)))))...)).............))))))..............---............... ( -19.20, z-score = -0.48, R) >consensus AAAUUGCGAGUAUUAAGUUACUCAUGAGCGGCA___GGAAACGUCGAAAGCUGGCUUUAAUAUAGCAGUUAAACAUCUUGAAUG___UUUUCUUUAAAUUAU .(((((((((((......))))).............(....)....((((....))))......))))))................................ ( -9.02 = -8.82 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:35 2011