| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,247,421 – 8,247,492 |
| Length | 71 |
| Max. P | 0.543704 |
| Location | 8,247,421 – 8,247,492 |
|---|---|
| Length | 71 |
| Sequences | 4 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 70.70 |
| Shannon entropy | 0.45219 |
| G+C content | 0.46959 |
| Mean single sequence MFE | -18.10 |
| Consensus MFE | -12.77 |
| Energy contribution | -12.78 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.32 |
| Mean z-score | -0.79 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.543704 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 8247421 71 + 22422827 UACCCCUGCUGCGAUGCACUCGUAUUUUUUUUUUUUC---GAAAAAUGGACAUGAGUAUGGGUAGGAGUAUGGG- ..(((.((((.(.((.(((((((.((..((((((...---))))))..)).))))))..).)).).)))).)))- ( -17.70, z-score = -1.21, R) >droSim1.chrX 6573063 62 + 17042790 UACCCCUGCUGCGAUGCCCCCGUAGUUUUUUUUUUUUUUAGAAAAGUGGGCAUGGGUAUGGG------------- ..(((.(((..(.((((((....(.((((((........)))))).))))))).)))).)))------------- ( -17.00, z-score = -0.65, R) >droSec1.super_35 98205 61 + 471130 UACCCCUGCUGCGAUGCCCACGUAGUUUUUUUUUUUUU-AGAAAAAUGGGCAUGGGUAUGGG------------- ..(((.(((..(.(((((((.....(((((((......-)))))))))))))).)))).)))------------- ( -18.90, z-score = -1.80, R) >droYak2.chrX 8704184 66 - 21770863 UAACCCUGCUGCGAAGCCCCCGUAGUUUUUC---------GGAAAAUGGGUACGGGCAUGGGUAUGGAUAUGGGG ..((((((((.((..(((((((........)---------)).....)))).)))))).))))............ ( -18.80, z-score = 0.50, R) >consensus UACCCCUGCUGCGAUGCCCCCGUAGUUUUUUUUUUUU___GAAAAAUGGGCAUGGGUAUGGG_____________ ...(((((((.((.(((((.....((((((((.......))))))))))))))))))).)))............. (-12.77 = -12.78 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:36 2011