| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,245,076 – 8,245,187 |
| Length | 111 |
| Max. P | 0.577097 |
| Location | 8,245,076 – 8,245,187 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 84.38 |
| Shannon entropy | 0.28108 |
| G+C content | 0.52544 |
| Mean single sequence MFE | -28.40 |
| Consensus MFE | -19.05 |
| Energy contribution | -20.10 |
| Covariance contribution | 1.05 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.577097 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8245076 111 + 22422827 AGACGUCAGAAGUUGCAACAAGAGACAAGUUGGAGACGCAGGAGCGCAGUGCUCG-GGAUGCGAAUGGAUGAAUAGGGGAAAGGUGCAGGAAAAUCCUGGGGACAGGACAAA ...((((.....(((((.(..(((((.....(....)((......)).)).))).-.).)))))...)))).......................(((((....))))).... ( -28.40, z-score = -2.02, R) >droEre2.scaffold_4690 10612110 112 + 18748788 AGACGUCACAAGUUGCAACAAGAGACAAGUUGGAGACGCUAGAGAGCAGUACUCGGGGCUGCAAGAAUGGAUGGGGGGGAAAGGUGCAGGAAAAUCCUGGGGACAGGACAAA ...((((.((..(((((.(..(((((.....(....)(((....))).)).)))..)..)))))...)))))).....................(((((....))))).... ( -29.30, z-score = -1.89, R) >droYak2.chrX 8701710 100 - 21770863 AGCCGUCAGAAGUUGCAACAAGAGACAAGUUGGAGACGCAAGAG------------AGUUGCAAAGGCUGGUUGGGGGAAAAGGUGCAGGAAAAUCCUGGGGACAGGACAAA ..((.((((.(((((((((....((....))(....).......------------.))))))...)))..)))).))................(((((....))))).... ( -25.50, z-score = -1.33, R) >droSec1.super_35 95875 110 + 471130 AGACGUCAGAAGUUGCAACCAGAGACAAGUUGGAGACGCAGGAGCACAGUGCUCG-GGAUGCGAAUGGAUGAAUGGGGA-GAGGUGCAGGAAAAUCCUGGGGACAGGACAAA ...((((.....(((((.((.(((((.....(....)((....))...)).))).-)).)))))...))))........-..............(((((....))))).... ( -30.40, z-score = -1.95, R) >droSim1.chrX 6570755 111 + 17042790 AGACGUCAGAAGUUGCAACAAGAGACAAGUUGGAGACGCAGGAGCGCAGUGCUCG-GGAUGCGAAUGGAUGAAUGGGGAAGAGGUGCAGGAAAAUCCUGGGGACAGGACAAA ...((((.....(((((.(..(((((.....(....)((......)).)).))).-.).)))))...)))).......................(((((....))))).... ( -28.40, z-score = -1.73, R) >consensus AGACGUCAGAAGUUGCAACAAGAGACAAGUUGGAGACGCAGGAGCGCAGUGCUCG_GGAUGCGAAUGGAUGAAUGGGGAAAAGGUGCAGGAAAAUCCUGGGGACAGGACAAA ............(((((.(............(....)(((.((((.....)))).....)))....................).))))).....(((((....))))).... (-19.05 = -20.10 + 1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:35 2011