| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,234,903 – 8,234,955 |
| Length | 52 |
| Max. P | 0.839193 |
| Location | 8,234,903 – 8,234,955 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 81.89 |
| Shannon entropy | 0.30558 |
| G+C content | 0.46916 |
| Mean single sequence MFE | -14.32 |
| Consensus MFE | -10.14 |
| Energy contribution | -10.10 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.839193 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8234903 52 + 22422827 GAAUAUGGAAAAUGGCACUUUGAACUGGCUCAAGUGUGGGUUCGUACCGGCA ..............((....((((((.((......)).)))))).....)). ( -11.80, z-score = -0.39, R) >droYak2.chrX 8690832 51 - 21770863 GAAUAUGGAAAAUGGCACUUUGAACUGGCUCAAGUGUUGGUUCGUACCGGC- ............(((.((...((((..((......))..)))))).)))..- ( -11.30, z-score = -0.76, R) >droEre2.scaffold_4690 10602280 51 + 18748788 GAAUAUGGAAAAUGGCACUUUGAACUGGCUGAAGUGUGGGUUCGUGCCGGC- ............((((((...(((((.((......)).)))))))))))..- ( -16.90, z-score = -3.24, R) >dp4.chrXL_group1e 1893511 52 + 12523060 GAAUAUGGAAAACGGUGCUCUGAACCAGUUCAAGUGCCGUUUCGUUAAGGAA .......((((.(((..((.((((....))))))..)))))))......... ( -15.40, z-score = -2.46, R) >droPer1.super_18 744276 52 + 1952607 GAAUAUGGAAAACGGUACUCUGAACCGGUUCAAGUGCCGUUUCGUUAAGGAA .......((((.(((((((.((((....)))))))))))))))......... ( -16.20, z-score = -2.54, R) >consensus GAAUAUGGAAAAUGGCACUUUGAACUGGCUCAAGUGUCGGUUCGUACCGGCA ...((((((...(((((((.(((......)))))))))).))))))...... (-10.14 = -10.10 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:34 2011