| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,229,164 – 8,229,220 |
| Length | 56 |
| Max. P | 0.677704 |
| Location | 8,229,164 – 8,229,220 |
|---|---|
| Length | 56 |
| Sequences | 6 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 92.13 |
| Shannon entropy | 0.14887 |
| G+C content | 0.56596 |
| Mean single sequence MFE | -12.90 |
| Consensus MFE | -12.40 |
| Energy contribution | -12.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.677704 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8229164 56 + 22422827 CCAACCGCGCUCAAGUUCGCCUUCGCCUUGGCAGUUGAUUUCUGUCACAGCUGCCG ......(((........))).........((((((((..........)))))))). ( -14.20, z-score = -1.01, R) >droSim1.chrX 6558468 56 + 17042790 CCAACCACGCUCAAGUUCGCCUUCGCCUUGGCAGUUGAUUUCUGUCACAGCUGCCG ........((........)).........((((((((..........)))))))). ( -12.70, z-score = -0.94, R) >droSec1.super_35 80939 56 + 471130 CCAACCACGCUCAAGUUCGCCUUCGCCUUGGCAGUUGAUUUCUGUCACAGCUGCCG ........((........)).........((((((((..........)))))))). ( -12.70, z-score = -0.94, R) >droYak2.chrX 8685577 55 - 21770863 -CCACCACGCUCAAGUUCGCCUUCGCCUUGGCAGUUGAUUUCUGUCACAGCUGCCG -.......((........)).........((((((((..........)))))))). ( -12.70, z-score = -0.97, R) >droEre2.scaffold_4690 10597137 55 + 18748788 -CCACCACGCUCAAGUUCGCCUUCGCCUUGGCAGUUGAUUUCUGUCACAGCUGCCG -.......((........)).........((((((((..........)))))))). ( -12.70, z-score = -0.97, R) >droAna3.scaffold_13248 624094 56 + 4840945 CAAACCAUUUUGCCAUUUGCCUUCGCCUUGGCAGUUGAUUUCUGUCACAGCUGCCG .............................((((((((..........)))))))). ( -12.40, z-score = -1.24, R) >consensus CCAACCACGCUCAAGUUCGCCUUCGCCUUGGCAGUUGAUUUCUGUCACAGCUGCCG .............................((((((((..........)))))))). (-12.40 = -12.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:33 2011