Locus 13663

Sequence ID dm3.chrX
Location 8,218,766 – 8,218,863
Length 97
Max. P 0.640969
window18803

overview

Window 3

Location 8,218,766 – 8,218,863
Length 97
Sequences 4
Columns 97
Reading direction forward
Mean pairwise identity 66.31
Shannon entropy 0.53042
G+C content 0.58022
Mean single sequence MFE -16.43
Consensus MFE -8.90
Energy contribution -8.28
Covariance contribution -0.62
Combinations/Pair 1.36
Mean z-score -1.09
Structure conservation index 0.54
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.31
SVM RNA-class probability 0.640969
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 8218766 97 + 22422827
CCGCUCCCAAUUUUACUCCCACUUCUACUUCCACUCCGGCUACCGCAUCUCCAUCUCCAGCACCAUCUCCUCUGGGUGCAGGUCCAACGAUUCUGGG
.................((((..((.....((......((....)).............(((((..........))))).))......))...)))) ( -15.10, z-score =   0.19, R)
>droSec1.super_35 70698 91 + 471130
CCGCUCCCAAUUUCACUCCCACUU------CCACUCCCGCUACCGCAUCUCCAUCUCCAGCACCAUCUCCCGUGGGUGCAAGUCCAACGAUUCUGGG
.....((((...((..........------........((....)).............(((((..........))))).........))...)))) ( -14.90, z-score =  -0.82, R)
>droYak2.chrX 8675014 73 - 21770863
------------------CCGCUC------CCAAUUUCACUGCCACUCCCACGUCGCCAUCUUCUUUGCUCCCGGGAGCAAGUCCAACGAUUCUGGG
------------------.....(------(((...((...((.((......)).)).......(((((((....)))))))......))...)))) ( -16.20, z-score =  -0.95, R)
>droEre2.scaffold_4690 10586454 91 + 18748788
ACGCUCCCAAUUUCACUCCCACUC------CCACAUCCACUCCUGCUCCCACUCCCGCAUCACCAUCUCAUCUGGGAGCAAGUGCAACGAUUCUGGG
.......................(------(((.(((((((..((((((((.....................))))))))))))....)))..)))) ( -19.50, z-score =  -2.78, R)
>consensus
CCGCUCCCAAUUUCACUCCCACUC______CCACUCCCACUACCGCACCCACAUCUCCAGCACCAUCUCCCCUGGGAGCAAGUCCAACGAUUCUGGG
.................((((.......................((((((.......................)))))).((((....)))).)))) ( -8.90 =  -8.28 +  -0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:32 2011