| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,192,596 – 8,192,650 |
| Length | 54 |
| Max. P | 0.944737 |
| Location | 8,192,596 – 8,192,650 |
|---|---|
| Length | 54 |
| Sequences | 4 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 71.21 |
| Shannon entropy | 0.46487 |
| G+C content | 0.45790 |
| Mean single sequence MFE | -10.27 |
| Consensus MFE | -7.65 |
| Energy contribution | -8.03 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.944737 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8192596 54 + 22422827 AUGGUCUGUGUGAGUAGAAACCGCCCGCCACCCGCAAUAACCAACCGAAUUUUC .((((...((((.((.(..........).)).))))...))))........... ( -7.50, z-score = 0.01, R) >droSim1.chrX 6521080 53 + 17042790 AUGGUCUAUGUGUGUGGAAACCGAACUCCAUCCGCAA-AACCAUCCAAAUUUUC (((((...((((..((((........))))..)))).-.))))).......... ( -13.80, z-score = -2.89, R) >droSec1.super_35 44618 53 + 471130 CUGGUCUAUGUGUGUGGAAACCGAACUCCACCCGCAA-AACCAUCCAAAUUUUC .((((...((((.(((((........))))).)))).-.))))........... ( -14.50, z-score = -3.27, R) >droWil1.scaffold_181096 6318774 54 + 12416693 AUUAUCUGGGUUAGUAGAAUUCGCGCAUUUCCUGCUCAUUUCAACCGCAUUUUC ......((((((....(((...(.(((.....))).)..))))))).))..... ( -5.30, z-score = 0.53, R) >consensus AUGGUCUAUGUGAGUAGAAACCGAACUCCACCCGCAA_AACCAACCAAAUUUUC .((((...((((.(((((........))))).))))...))))........... ( -7.65 = -8.03 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:31 2011