| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,592,923 – 10,592,991 |
| Length | 68 |
| Max. P | 0.897857 |
| Location | 10,592,923 – 10,592,991 |
|---|---|
| Length | 68 |
| Sequences | 3 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 60.48 |
| Shannon entropy | 0.57110 |
| G+C content | 0.48868 |
| Mean single sequence MFE | -15.57 |
| Consensus MFE | -8.43 |
| Energy contribution | -8.10 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.897857 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10592923 68 + 23011544 GGUUCUCGGCACUCGCUGCCGCAUACCUCACCUUGAUAUGACAACCAACAUGCUG--UGGUUCUCCAAAU (((...(((((.....)))))...)))............((.(((((........--))))).))..... ( -15.20, z-score = -1.24, R) >droYak2.chr2R 20933168 70 - 21139217 GAUCUGCGGUUCUCGUAGCCGCAUAGUUCACCUAGUAACAAUGAACAGCAUUCCAAAUGGUUUAGCGAAU ....(((((((.....)))))))..(((((...........))))).(((..((....))..).)).... ( -15.00, z-score = -0.99, R) >droEre2.scaffold_4845 20419861 59 - 22589142 -----GCGGCUCUCGUAGCCGCAUAGCUCACCUAGUAAGUAUGAAGAACAUUCCGGAUGUUCUC------ -----((((((.....))))))......................((((((((...)))))))).------ ( -16.50, z-score = -1.68, R) >consensus G_U__GCGGCUCUCGUAGCCGCAUAGCUCACCUAGUAACAAUGAACAACAUUCCG_AUGGUUUA_C_AAU .....((((((.....))))))................................................ ( -8.43 = -8.10 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:34 2011