| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,167,901 – 8,167,952 |
| Length | 51 |
| Max. P | 0.662746 |
| Location | 8,167,901 – 8,167,952 |
|---|---|
| Length | 51 |
| Sequences | 6 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 73.33 |
| Shannon entropy | 0.52596 |
| G+C content | 0.67183 |
| Mean single sequence MFE | -17.78 |
| Consensus MFE | -12.48 |
| Energy contribution | -11.23 |
| Covariance contribution | -1.24 |
| Combinations/Pair | 1.82 |
| Mean z-score | -0.60 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.662746 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 8167901 51 + 22422827 AGCGGACACGGUGCCGGAUUCGCGCAUUCCGGGGGUGGACGGGGUGCCAAC .(((((..((....))..)))))((((((((........)))))))).... ( -22.80, z-score = -1.90, R) >droSim1.chrX 6503079 51 + 17042790 AGCGGACACGGGGCCGGAUUCGCGCAUUCCGGGGGUGGACGGGGUGCCAAC .(((((..((....))..)))))((((((((........)))))))).... ( -22.80, z-score = -2.20, R) >droSec1.super_35 19495 51 + 471130 AGCGGACACGGGGCCGGAUUCGCGCAUUCCGGGGGUGGACGGGGUGUCAAC .(((((..((....))..)))))((((((((........)))))))).... ( -20.70, z-score = -1.96, R) >droYak2.chrX 8623713 51 - 21770863 AGCGGACACGGGGCCGGAUUCUCGCGUUCUGGGGUUUGACGGGGUGCCAAU .((((((.(((((((((....))).))))))..))))).)((....))... ( -13.90, z-score = 0.99, R) >droEre2.scaffold_4690 10532964 51 + 18748788 AGCGGACACGGGGCCGGAUUUUCGCAUUCCGGGGGUUGACGGGGUGCCAAC ..(((........))).......((((((((........)))))))).... ( -15.40, z-score = 0.16, R) >droWil1.scaffold_180777 4443324 50 - 4753960 AGCAUGUCCAGGGGUGGACUAAAUAACUGCGCCGGCCUGUUGACUUGGGC- .....(((((((((....))...((((.((....))..)))).)))))))- ( -11.10, z-score = 1.31, R) >consensus AGCGGACACGGGGCCGGAUUCGCGCAUUCCGGGGGUGGACGGGGUGCCAAC ..(((........))).......((((((((........)))))))).... (-12.48 = -11.23 + -1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:27 2011