| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,139,861 – 8,139,981 |
| Length | 120 |
| Max. P | 0.850280 |
| Location | 8,139,861 – 8,139,981 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.58 |
| Shannon entropy | 0.25494 |
| G+C content | 0.34661 |
| Mean single sequence MFE | -28.57 |
| Consensus MFE | -19.00 |
| Energy contribution | -21.88 |
| Covariance contribution | 2.88 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.850280 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8139861 120 + 22422827 CUAUCACUGAUAAGGAUUUUCAACUAAUCUAGAUACUGGUUAAGAACAAAAACAGACCAUGCCAAUACAACAUGGCUAUUGAUGUUACUAACGGUGAUAAGUUUUUAAUAAUACAAGGUG .(((((((.....(((((.......)))))........((((..((((..((.((.(((((.........))))))).))..))))..)))))))))))..................... ( -21.60, z-score = -0.95, R) >droEre2.scaffold_4690 10506581 107 + 18748788 UUAUCACUGAUAGGGAUUUUCAAUUAAUCUAGAUACUGGUUCAG-------------UAUGCCAAAACAACAUCGUUAUUGAUGUUACAAUCGGUGAUAAGUGUUCAUGAAUACAAGGUG (((((((((((.((((((.......))))...((((((...)))-------------))).)).....(((((((....)))))))...)))))))))))(((((....)))))...... ( -28.60, z-score = -2.79, R) >droYak2.chrX 8596538 120 - 21770863 UUAUCACUGAUAAGGAUUUUCAACUAAUCUAGAUACUGGCUAAGAACAAUAGCAGUCCAUGCCAAAACAACAUGGUUGUUGAUGUUCCUAUCGGUGAUAAGUGUGACAGAAUACAAGGUG ((((((((((((.(((...(((((..........((((.(((.......)))))))(((((.........)))))..)))))...)))))))))))))))((((......))))...... ( -34.90, z-score = -3.15, R) >droSec1.super_44 231015 120 + 251150 UUAUCACUGAUAGGGAUUUUCAACUAAUCUAGAUACUGGUUAAGAACAAUAACAGACCAUGCCAAAACAACAUGGCUUUUGAUGUUACUAUCGGUGAAAAGUGUUCAAGAAUACAAGGUG ...(((((((((((((((.......)))))..............((((.(((.((.(((((.........))))))).))).)))).))))))))))...(((((....)))))...... ( -29.20, z-score = -2.40, R) >consensus UUAUCACUGAUAAGGAUUUUCAACUAAUCUAGAUACUGGUUAAGAACAAUAACAGACCAUGCCAAAACAACAUGGCUAUUGAUGUUACUAUCGGUGAUAAGUGUUCAAGAAUACAAGGUG (((((((((((((.(((..((((((((((........)))))..................((((........)))).))))).))).)))))))))))))(((((....)))))...... (-19.00 = -21.88 + 2.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:26 2011