| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,138,388 – 8,138,525 |
| Length | 137 |
| Max. P | 0.753774 |
| Location | 8,138,388 – 8,138,525 |
|---|---|
| Length | 137 |
| Sequences | 5 |
| Columns | 138 |
| Reading direction | reverse |
| Mean pairwise identity | 95.21 |
| Shannon entropy | 0.08463 |
| G+C content | 0.51311 |
| Mean single sequence MFE | -46.08 |
| Consensus MFE | -40.96 |
| Energy contribution | -40.84 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.753774 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8138388 137 - 22422827 UACUUAGAGGAUGUGCUCUUUUUGGCGCCCACAACGAUGGCGCAAAUCAUGUACUUCAGCAUGAUACGAGUUUCG-AGUGCUGUUCGCGCGACCCCGACUGUACAAUUCCAGUUGGAGCGGGUGCGCGAUGACGAUUG ............(..(((..(((((((((.........)))))..(((((((......))))))).))))....)-))..)...(((((((.(((((((((........)))))))...)).)))))))......... ( -46.10, z-score = -1.16, R) >droEre2.scaffold_4690 10505118 135 - 18748788 UACUUAGAAGAUGUGCUCUUUUUGGCGCCCACAACGAUGGCGCAAAUCAUGUACUUCAGCAUGAUACGA--UUUUGAGUGCUCUUCGUGCGACCCCGACUGUACAAUUCCAGUUGGA-CGGGUGCGCGAUGACGAUUG ......(((((.(..(((...((((((((.........)))))..(((((((......))))))).)))--....)))..))))))(((((.(((((((((........))))))).-.)).)))))........... ( -48.70, z-score = -3.55, R) >droYak2.chrX 8595049 138 + 21770863 UACUUAGAGGAUGUGCUCUUUUUGGCGCCCACAACGAUGGCGCAGAUCAUGUACUUCAGCAUGAUACGAAUUUUGAAGUGCUCUCCGUGCGACCCCGACUGUACAAUUCCAGUUGGAGCGGGUGCGCGAUGACGAUUG .....((((......)))).....(((((.........))))).((((..(((((((((.((.......)).)))))))))((..((((((.(((((((((........)))))))...)).))))))..)).)))). ( -43.70, z-score = -1.14, R) >droSec1.super_44 229483 137 - 251150 UACUUAGAGGAUGUGCUCUUUUUGGCGCCCACAAUGAUGGCGCAAAUCAUGUACUUCAACAUGAUACGAGUUUCG-AGUGCUGUUCGCGCGACCCCGACUGUACAAUUCCAGUUGGAGCGGGUGCGCGAUGACGAUUG ............(..(((..(((((((((.........)))))..(((((((......))))))).))))....)-))..)...(((((((.(((((((((........)))))))...)).)))))))......... ( -45.80, z-score = -1.58, R) >droSim1.chrX 6488379 137 - 17042790 UACUUAGAGGAUGUGCUCUUUUUGGCGCCCACAAUGAUGGCGCAAAUCAUGUACUUCAGCAUGAUACGAGUUUCG-AGUGCUGUUCGCGCGACCCCGACUGUACAAUUCCAGUUGGAGCGGGUGCGCGAUGACGAUUG ............(..(((..(((((((((.........)))))..(((((((......))))))).))))....)-))..)...(((((((.(((((((((........)))))))...)).)))))))......... ( -46.10, z-score = -1.28, R) >consensus UACUUAGAGGAUGUGCUCUUUUUGGCGCCCACAACGAUGGCGCAAAUCAUGUACUUCAGCAUGAUACGAGUUUCG_AGUGCUGUUCGCGCGACCCCGACUGUACAAUUCCAGUUGGAGCGGGUGCGCGAUGACGAUUG ............(..((...(((((((((.........)))))..(((((((......))))))).))))......))..)...(((((((.(((((((((........)))))))...)).)))))))......... (-40.96 = -40.84 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:25 2011