| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,135,252 – 8,135,344 |
| Length | 92 |
| Max. P | 0.922849 |
| Location | 8,135,252 – 8,135,344 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 73.46 |
| Shannon entropy | 0.45797 |
| G+C content | 0.61868 |
| Mean single sequence MFE | -42.42 |
| Consensus MFE | -24.22 |
| Energy contribution | -25.78 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.922849 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8135252 92 - 22422827 CUUGGUGGAACCUUGGC------CACCCUGGAGGGAUCGAUGCUGAUGCUGUGGGCCAACGGUGGCAGGCGCACGGCAUU---GGCAUUUGGUCCCGCUCC----------- ...(((((........)------))))..((((((((((((((..((((((((.(((..........))).)))))))).---.))).))))))))..)))----------- ( -48.50, z-score = -3.45, R) >droSim1.chrX 6485239 92 - 17042790 CUUGGUGGAACCUUGGC------CACCUUGGAGGGAUCGAUGCUGAUGCUGUGGGCCAACGGUGGCAGGCGCAUAGCAUU---GGCAUUAAGUCCGGCUCC----------- ...(((((........)------))))..((((((((.(((((..((((((((.(((..........))).)))))))).---.)))))..))))..))))----------- ( -44.10, z-score = -3.23, R) >droSec1.super_44 226347 92 - 251150 CUUGGCGGAACCUUGGC------CACCCUGGAGGGAUCGAUGCUGAUGCUGUGGGCCAACGGUGGCAGGCGCAUAGCAUU---GGCAUUCGGUCCCGCUCC----------- ..((((.((...)).))------))....((((((((((((((..((((((((.(((..........))).)))))))).---.))).))))))))..)))----------- ( -47.10, z-score = -3.02, R) >droYak2.chrX 8591960 98 + 21770863 CUUGGAGGUACCAUGGCCACCGGCACCCUGGAUGGAUCGAUGCUGAUGCUUUGGGCCAAUGGUGGCAGGCGCACGGCAUU---GGUAUUCGGUCCUGCUCC----------- ...((((...(((..(((...)))....)))..((((((((((..(((((.((.(((..........))).)).))))).---.))).)))))))..))))----------- ( -41.50, z-score = -1.20, R) >droEre2.scaffold_4690 10501812 98 - 18748788 CUUGGCGGUACCAUGGCCACCGGAACCCUGGAAGGAUCGAUGAUGAUGCUUUGGGCCAAUGGUGGCAGGCGCACGGCAUU---CGUAUUCGCUCCCGCUCC----------- ...(((((((((((((((.((((....))))(((.(((......))).)))..)))).))))))...((((.(((.....---)))...)))).)))))..----------- ( -35.00, z-score = 0.20, R) >droAna3.scaffold_13335 1733147 112 + 3335858 CGCGGCGGAACUAUAGCUACUGGCACCUUGGACGGAUUGCCAAUCAGCUCAGAAGCCAAUGGCGGCGGUCGGUUCGCAUUCCCCGCUGGCGAUCCUACUCCUCCAAUUCCGC ....((((((.....((.....)).....(((.((((((((.....(((....)))....(((((.((...(....)...)))))))))))))))...))).....)))))) ( -38.30, z-score = -0.33, R) >consensus CUUGGCGGAACCAUGGC______CACCCUGGAGGGAUCGAUGCUGAUGCUGUGGGCCAACGGUGGCAGGCGCACGGCAUU___GGCAUUCGGUCCCGCUCC___________ ...((((...((..((.........))..))..((((((((((((((((((((.(((..........))).)))))))))...)))).)))))))))))............. (-24.22 = -25.78 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:24 2011