| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,123,444 – 8,123,614 |
| Length | 170 |
| Max. P | 0.576672 |
| Location | 8,123,444 – 8,123,614 |
|---|---|
| Length | 170 |
| Sequences | 3 |
| Columns | 170 |
| Reading direction | reverse |
| Mean pairwise identity | 76.82 |
| Shannon entropy | 0.32847 |
| G+C content | 0.45284 |
| Mean single sequence MFE | -25.10 |
| Consensus MFE | -17.15 |
| Energy contribution | -18.27 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.576672 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8123444 170 - 22422827 UUUUUUUUUUCAUUUCCCCCCCGCACAGCUCAAUGGCUGUCAAACUGUAUGGCACUAGUCGCUUUGCAGUUUUCAAUUAAUUACAUUUAGCAAAUGUGUUUUAGCCACCACUUUGCCCUAUUGCCGCCUCCCUUCUCCAUCCGCCGUCUCUGUCGCUCUAUUUUUUGUUU ......................((((((....(((((((..((((((((.(((.......))).)))))))).))..............(((((.(((..........))))))))..........................)))))..)))).)).............. ( -28.80, z-score = -1.74, R) >droSec1.super_44 214456 169 - 251150 UUUUUCUUCACCUUCCCCCCACUCACAGCUCAAUGGCUGUCAAACUGUAUGGCACUAGUCGCUUUCCAGUUUUCAAUUAAUUACAUUUAGCAAAUGUGUUUUAGCCACCACUUUGCCUUACUCCCGCCUCCCUUCUCCAUCCGCCGUCUCUGUCGCUCUAUUUAUUUUU- ........................((((....(((((((..((((((...(((.......)))...)))))).))..............(((((.(((..........))))))))..........................)))))..))))................- ( -21.70, z-score = -1.25, R) >droEre2.scaffold_4690 10490214 146 - 18748788 ------------UUAAUCCUAC---CAGCUCAAUGGCCGCCAAACUGUAUGACACCAGUCGCUUUGCAGUUUUCAAUUAAUUGCAUUUGGCACAUGUGUUUUCGCCAACACUUCGCCCAAUUCUCUUCCAACUUCUCCCUCGUCCGUCUCUGUCGCUCUCG--------- ------------..........---.(((.((..(((.((((((......(((....)))....(((((((.......)))))))))))))....(((((......)))))..................................)))..))..)))....--------- ( -24.80, z-score = -1.56, R) >consensus UUUUU_UU__C_UUACCCCCAC_CACAGCUCAAUGGCUGUCAAACUGUAUGGCACUAGUCGCUUUGCAGUUUUCAAUUAAUUACAUUUAGCAAAUGUGUUUUAGCCACCACUUUGCCCUAUUCCCGCCUCCCUUCUCCAUCCGCCGUCUCUGUCGCUCUAUUU_UU_UU_ ..........................(((.(((((((....((((((((((((....))))...)))))))).................(((((.(((..........))))))))..........................)))))...))..)))............. (-17.15 = -18.27 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:23 2011