| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,112,695 – 8,112,766 |
| Length | 71 |
| Max. P | 0.982240 |
| Location | 8,112,695 – 8,112,766 |
|---|---|
| Length | 71 |
| Sequences | 8 |
| Columns | 79 |
| Reading direction | forward |
| Mean pairwise identity | 78.38 |
| Shannon entropy | 0.41981 |
| G+C content | 0.31806 |
| Mean single sequence MFE | -16.59 |
| Consensus MFE | -7.00 |
| Energy contribution | -6.21 |
| Covariance contribution | -0.79 |
| Combinations/Pair | 1.42 |
| Mean z-score | -3.13 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.10 |
| SVM RNA-class probability | 0.982240 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8112695 71 + 22422827 -AGCCCACAAUCAAUUAAAUUUCAUUUCAAUUU-------GCCAAAUGGCAAAAUGAGUUCGACUGAACUUUAAUUGAA -.........(((((((((.((((.((((.(((-------(((....)))))).))))......)))).))))))))). ( -19.60, z-score = -4.58, R) >droSim1.chrX 6468083 72 + 17042790 AGCCCCACAAUCAAUUAAGUUUCAUUUCAAUUU-------GCCAAAUGGCAAAAUGAGUUCGACUGAACUUUAAUUGAA ..........(((((((((.((((.((((.(((-------(((....)))))).))))......)))).))))))))). ( -19.30, z-score = -4.16, R) >droSec1.super_44 203851 71 + 251150 -AGCCCACAAUCAAUUAAGUUUCAUUUCAAUUU-------GCCAAAUGGCAAAAUGAGUUCGACUGAACUUUAAUUGAA -.........(((((((((.((((.((((.(((-------(((....)))))).))))......)))).))))))))). ( -19.30, z-score = -4.08, R) >droYak2.chrX 8568987 71 - 21770863 -AGCCCACAAUCAAUUAAGUUUUAUUUCAAUUU-------GCCAAAUGGCAAAAUGAGUUCGACUGAACUUUAAUUGAA -.........(((((((((.......(((.(((-------(((....)))))).)))((((....))))))))))))). ( -18.90, z-score = -4.09, R) >droEre2.scaffold_4690 10480256 71 + 18748788 -AGCCCACAAUCAAUUAAGUUUUAUUUCAAUUU-------GCCAAAUGGCAAAAUGAGUUCAACUAAACUUUAAUUGAA -.........((((((((((((...((((.(((-------(((....)))))).)))).......)))).)))))))). ( -18.20, z-score = -4.32, R) >droAna3.scaffold_13417 460980 54 + 6960332 ---CCCACAAUCAAUUAAGCUUCAUUUCGAUUC-------A---------------AGUUCAGCCGAACUUUAAUUGGA ---......................(((((((.-------(---------------(((((....)))))).))))))) ( -9.90, z-score = -2.50, R) >dp4.chrXL_group1e 4051917 78 + 12523060 -AACCGGCAAUCAAUUAAGUUUCAUUUCAAUUGCAAAAUGGGAAAUGGGAAAAAUGAAUUCAAGUGUACUUUAAUUGGA -.........((((((((((..((((((.(((....)))..))))))..)....((....)).......))))))))). ( -12.70, z-score = -0.32, R) >droPer1.super_17 987940 78 + 1930428 -AACCGGCAAUCAAUUAAGUUUCAUUUCAAUUGCAAAAUGGGAAAUGGGAAAAAUGAAUUCAACUGUUCUUUAAUUGGA -.........((((((((((..((((((.(((....)))..))))))..).....((((......))))))))))))). ( -14.80, z-score = -0.98, R) >consensus _AGCCCACAAUCAAUUAAGUUUCAUUUCAAUUU_______GCCAAAUGGCAAAAUGAGUUCAACUGAACUUUAAUUGAA ..........(((((((((.((((.((.((((........................)))).)).)))).))))))))). ( -7.00 = -6.21 + -0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:19 2011