| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,588,841 – 10,588,941 |
| Length | 100 |
| Max. P | 0.784770 |
| Location | 10,588,841 – 10,588,941 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 86.61 |
| Shannon entropy | 0.23358 |
| G+C content | 0.47698 |
| Mean single sequence MFE | -29.46 |
| Consensus MFE | -24.92 |
| Energy contribution | -24.96 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.784770 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10588841 100 + 23011544 ACACCCAAUGACCAUGGUUUCCAUAGUGGGUUGGGUCCAUCCAGCGAUGUGGAACGAUUCCAAAUCGAUGCAUCGCAGACUGAUUUCAUUCAGCUCUUUU ..(((((((.((.((((...)))).)).).)))))).......((((((((...((((.....)))).))))))))(((((((......)))).)))... ( -30.50, z-score = -1.59, R) >droSim1.chr2L 10393255 98 + 22036055 ACACCCAAUGUCCAUGGUUUCCAUAGUGGGUUGGGUCCAUCCAGCGAUGUGGAACGAUUCCAAAUCGAUGCAUCGCAGACUGAUUUCAUUCAGCUCUU-- ..(((((((.(.(((((...)))).).).))))))).......((((((((...((((.....)))).))))))))(((((((......)))).))).-- ( -30.40, z-score = -1.54, R) >droSec1.super_3 6014750 96 + 7220098 ACACCCAAUGUCCAUGGUUUCCACAGUGGGUUGGGUCCAUCCAGCGAUGUGGAACGAUUCCAAAUCGAUGCAUCGCAGAGUGAUUUCAUUCAGCUC---- ..(((((((..((((.((....)).))))))))))).......((((((((...((((.....)))).)))))))).(((((....))))).....---- ( -30.90, z-score = -1.55, R) >droYak2.chr2L 6998568 98 + 22324452 ACACCCAAUGUCCAUGCUUUUCACACUGGGUUGGGUUCGGCCAGCGAUGUGGAACGAUUCCAAAUCGGUGCAUCGCAGACUGAUUUCAUUCAUAUUUU-- ..(((((((..(((((.......)).))))))))))((((.(.((((((((...((((.....)))).)))))))).).))))...............-- ( -26.40, z-score = -0.61, R) >droEre2.scaffold_4929 11802479 88 - 26641161 ACACCCAAUGUUCAU-----UCACAGUGGGUUGGGUGCGGCUAGCGAUGUGGAACGAUUUUAAAUCGGUGCAUCGCAGACUGAUUUCAUUCAU------- .((((((((..((((-----.....))))))))))))(((((.((((((((...((((.....)))).)))))))))).)))...........------- ( -29.10, z-score = -2.30, R) >consensus ACACCCAAUGUCCAUGGUUUCCACAGUGGGUUGGGUCCAUCCAGCGAUGUGGAACGAUUCCAAAUCGAUGCAUCGCAGACUGAUUUCAUUCAGCUCUU__ ..(((((((..((((..........))))))))))).......((((((((...((((.....)))).)))))))).((.((....)).))......... (-24.92 = -24.96 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:33 2011