| Sequence ID | dm3.chrX |
|---|---|
| Location | 8,108,619 – 8,108,710 |
| Length | 91 |
| Max. P | 0.823446 |
| Location | 8,108,619 – 8,108,710 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 75.88 |
| Shannon entropy | 0.37339 |
| G+C content | 0.36690 |
| Mean single sequence MFE | -24.00 |
| Consensus MFE | -12.06 |
| Energy contribution | -12.30 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.823446 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 8108619 91 + 22422827 AUGCACCCAAAAAACGUGUAGUAAAGU------------AUGCUGCGCU--GAUGCAUCUGAUCUGAUUAUCGCAUAUCAAUUGAGAUGACUUUUUUCCGGUGUA .((((((..(((((.((((((((....------------.)))))))).--....(((((.(..((((........))))..).)))))...)))))..)))))) ( -26.20, z-score = -2.83, R) >droYak2.chrX 8564759 103 - 21770863 AAUCACACAAACG-UGCGUAGGAAAGUAUGCUGCGUUAUAUUUUAUGUUUAGAUAAAUCUGAUCUGAGUAUCGGAUGUCAAUUAAGAUGACUUUUUCCCG-UGCA ............(-..((..(((((((...((..((((((((..((((((((((.......))))))))))..))))).)))..))...)))))))..))-..). ( -23.60, z-score = -1.16, R) >droSec1.super_44 199833 94 + 251150 AAACACCUAAAAA-UGUGUAGGAAAGUUU----------AUUCUAUGUUUGGAAACACCUGAUCUGAUUAUCGCAUAUCGAUUGCGAUGACUUUUUUCCGGUGUA .....((((....-....)))).......----------.(((((....)))))(((((.((...((((((((((.......)))))))).))...)).))))). ( -23.30, z-score = -2.55, R) >droSim1.chrX 6464067 94 + 17042790 GAACACCUAAAAA-UGUGUAGGAAAGUUU----------AUUCUACGUUUGAAUACACCUGAUCUGAUUAUCGCAUAUCCAUUGCGAUGACUUUUUUCCGGUGUA .............-...((((((......----------.)))))).......((((((.((...((((((((((.......)))))))).))...)).)))))) ( -22.90, z-score = -2.68, R) >consensus AAACACCCAAAAA_UGUGUAGGAAAGUUU__________AUUCUACGUUUGGAUACACCUGAUCUGAUUAUCGCAUAUCAAUUGAGAUGACUUUUUUCCGGUGUA ..(((((........((((((((.................))))))))...................((((((((.......)))))))).........))))). (-12.06 = -12.30 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:25:15 2011